Hb_029879_110

Information

Type -
Description -
Location Contig29879: 80399-81607
Sequence    

Annotation

kegg
ID rcu:RCOM_0905260
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091376.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
swissprot
ID Q8LE47
description Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2
trembl
ID A0A067JLA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21241 PE=4 SV=1
Gene Ontology
ID GO:0005743
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31235: 79931-81465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
2 Hb_000220_220 0.0856773254 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
3 Hb_000116_440 0.0906266882 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
4 Hb_004310_030 0.0952744003 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
5 Hb_000062_550 0.0954135439 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
6 Hb_005064_060 0.1024833026 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_011883_010 0.1025014428 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
8 Hb_000086_380 0.1036092658 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
9 Hb_007894_140 0.1055078056 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
10 Hb_004577_020 0.107218205 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
11 Hb_005056_060 0.1075161777 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
12 Hb_000002_340 0.1078346881 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
13 Hb_017224_030 0.1079407596 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
14 Hb_000221_210 0.1086803754 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
15 Hb_006198_110 0.1098555749 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
16 Hb_002107_030 0.1102724558 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
17 Hb_000853_170 0.1103878036 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
18 Hb_000059_330 0.1107900328 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
19 Hb_000853_420 0.1113258904 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_011671_430 0.1130215499 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]

Gene co-expression network

sample Hb_029879_110 Hb_029879_110 Hb_000220_220 Hb_000220_220 Hb_029879_110--Hb_000220_220 Hb_000116_440 Hb_000116_440 Hb_029879_110--Hb_000116_440 Hb_004310_030 Hb_004310_030 Hb_029879_110--Hb_004310_030 Hb_000062_550 Hb_000062_550 Hb_029879_110--Hb_000062_550 Hb_005064_060 Hb_005064_060 Hb_029879_110--Hb_005064_060 Hb_011883_010 Hb_011883_010 Hb_029879_110--Hb_011883_010 Hb_000220_220--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_000220_220--Hb_001579_220 Hb_003494_200 Hb_003494_200 Hb_000220_220--Hb_003494_200 Hb_000680_160 Hb_000680_160 Hb_000220_220--Hb_000680_160 Hb_000853_170 Hb_000853_170 Hb_000220_220--Hb_000853_170 Hb_000103_090 Hb_000103_090 Hb_000116_440--Hb_000103_090 Hb_002893_080 Hb_002893_080 Hb_000116_440--Hb_002893_080 Hb_000003_080 Hb_000003_080 Hb_000116_440--Hb_000003_080 Hb_002890_140 Hb_002890_140 Hb_000116_440--Hb_002890_140 Hb_032717_080 Hb_032717_080 Hb_000116_440--Hb_032717_080 Hb_007254_040 Hb_007254_040 Hb_004310_030--Hb_007254_040 Hb_008554_020 Hb_008554_020 Hb_004310_030--Hb_008554_020 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_001135_050 Hb_001135_050 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030 Hb_000300_640 Hb_000300_640 Hb_000062_550--Hb_000300_640 Hb_000005_260 Hb_000005_260 Hb_000062_550--Hb_000005_260 Hb_000802_080 Hb_000802_080 Hb_000062_550--Hb_000802_080 Hb_003376_360 Hb_003376_360 Hb_000062_550--Hb_003376_360 Hb_000062_550--Hb_005064_060 Hb_001366_190 Hb_001366_190 Hb_000062_550--Hb_001366_190 Hb_011218_040 Hb_011218_040 Hb_005064_060--Hb_011218_040 Hb_004577_020 Hb_004577_020 Hb_005064_060--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_005064_060--Hb_010417_080 Hb_000260_270 Hb_000260_270 Hb_005064_060--Hb_000260_270 Hb_035398_020 Hb_035398_020 Hb_005064_060--Hb_035398_020 Hb_017224_030 Hb_017224_030 Hb_005064_060--Hb_017224_030 Hb_011883_010--Hb_017224_030 Hb_005291_030 Hb_005291_030 Hb_011883_010--Hb_005291_030 Hb_000571_120 Hb_000571_120 Hb_011883_010--Hb_000571_120 Hb_003057_100 Hb_003057_100 Hb_011883_010--Hb_003057_100 Hb_011671_430 Hb_011671_430 Hb_011883_010--Hb_011671_430 Hb_000953_020 Hb_000953_020 Hb_011883_010--Hb_000953_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.3775 18.5479 6.03043 13.0187 18.5375 21.8663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7271 23.2478 12.2433 15.874 12.377

CAGE analysis