Hb_029879_120

Information

Type -
Description -
Location Contig29879: 94977-101190
Sequence    

Annotation

kegg
ID rcu:RCOM_0905240
description hypothetical protein
nr
ID XP_002518505.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q402F4
description Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1
trembl
ID B9RXN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905240 PE=4 SV=1
Gene Ontology
ID GO:0009705
description tobamovirus multiplication protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31237: 94877-101099 , PASA_asmbl_31238: 97392-97780 , PASA_asmbl_31239: 96722-96953 , PASA_asmbl_31240: 100149-100453 , PASA_asmbl_31242: 99346-99543 , PASA_asmbl_31243: 95282-95447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001702_050 0.0723517534 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
3 Hb_003125_180 0.0785081353 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
4 Hb_000019_010 0.0903765497 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
5 Hb_011174_080 0.0979183687 - - PREDICTED: sulfite oxidase [Jatropha curcas]
6 Hb_001235_130 0.1110724886 - - -
7 Hb_000157_070 0.111999265 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
8 Hb_000019_170 0.1142234205 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
9 Hb_000684_360 0.1148376307 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
10 Hb_001998_220 0.115845366 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
11 Hb_000109_260 0.118382978 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
12 Hb_169051_010 0.1184888004 - - JHL06B08.1 [Jatropha curcas]
13 Hb_011032_010 0.1200984314 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_010407_030 0.1207946323 - - PREDICTED: casein kinase I-like [Jatropha curcas]
15 Hb_005854_040 0.1234203934 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003490_050 0.1241452443 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
17 Hb_102763_010 0.1253060187 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
18 Hb_053575_020 0.125970041 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
19 Hb_000540_100 0.1263984134 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
20 Hb_001006_010 0.1313917683 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_029879_120 Hb_029879_120 Hb_001702_050 Hb_001702_050 Hb_029879_120--Hb_001702_050 Hb_003125_180 Hb_003125_180 Hb_029879_120--Hb_003125_180 Hb_000019_010 Hb_000019_010 Hb_029879_120--Hb_000019_010 Hb_011174_080 Hb_011174_080 Hb_029879_120--Hb_011174_080 Hb_001235_130 Hb_001235_130 Hb_029879_120--Hb_001235_130 Hb_000157_070 Hb_000157_070 Hb_029879_120--Hb_000157_070 Hb_001998_220 Hb_001998_220 Hb_001702_050--Hb_001998_220 Hb_000985_050 Hb_000985_050 Hb_001702_050--Hb_000985_050 Hb_005000_090 Hb_005000_090 Hb_001702_050--Hb_005000_090 Hb_021977_010 Hb_021977_010 Hb_001702_050--Hb_021977_010 Hb_001702_050--Hb_003125_180 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_000674_010 Hb_000674_010 Hb_003125_180--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_003125_180--Hb_003058_200 Hb_000019_010--Hb_011174_080 Hb_000019_010--Hb_003125_180 Hb_000019_010--Hb_001702_050 Hb_000019_010--Hb_001235_130 Hb_003490_050 Hb_003490_050 Hb_000019_010--Hb_003490_050 Hb_011174_080--Hb_001235_130 Hb_000157_140 Hb_000157_140 Hb_011174_080--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_011174_080--Hb_002805_090 Hb_000256_160 Hb_000256_160 Hb_011174_080--Hb_000256_160 Hb_011174_080--Hb_001702_050 Hb_001235_130--Hb_000256_160 Hb_007229_050 Hb_007229_050 Hb_001235_130--Hb_007229_050 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_005588_120 Hb_005588_120 Hb_001235_130--Hb_005588_120 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_135959_010 Hb_135959_010 Hb_000157_070--Hb_135959_010 Hb_020805_180 Hb_020805_180 Hb_000157_070--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93846 10.8244 7.08904 13.7304 3.20238 5.28924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5716 2.05188 0.822515 15.2606 15.4258

CAGE analysis