Hb_029879_130

Information

Type -
Description -
Location Contig29879: 101555-106926
Sequence    

Annotation

kegg
ID rcu:RCOM_0905230
description Derlin-2, putative
nr
ID XP_002518504.1
description Derlin-2, putative [Ricinus communis]
swissprot
ID Q9ZS88
description Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1
trembl
ID B9RXN5
description Derlin-2, putative OS=Ricinus communis GN=RCOM_0905230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31245: 101417-107013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_130 0.0 - - Derlin-2, putative [Ricinus communis]
2 Hb_000260_030 0.0570932886 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
3 Hb_004109_170 0.0608584882 - - PREDICTED: probable ribokinase [Jatropha curcas]
4 Hb_004635_100 0.0654093241 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
5 Hb_001902_140 0.07278821 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
6 Hb_000614_160 0.0728083337 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
7 Hb_002408_020 0.0757171841 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
8 Hb_000928_210 0.0771151559 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
9 Hb_003053_020 0.0782037286 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
10 Hb_012675_050 0.078925304 - - conserved hypothetical protein [Ricinus communis]
11 Hb_118419_010 0.079227985 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
12 Hb_012423_030 0.0794867667 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000703_350 0.079781199 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
14 Hb_002046_180 0.0804704452 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
15 Hb_004934_100 0.0822038479 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012019_010 0.0832068786 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
17 Hb_075449_010 0.0834100049 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
18 Hb_000676_180 0.0836546263 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
19 Hb_000336_150 0.0840681381 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
20 Hb_005463_100 0.0852219717 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]

Gene co-expression network

sample Hb_029879_130 Hb_029879_130 Hb_000260_030 Hb_000260_030 Hb_029879_130--Hb_000260_030 Hb_004109_170 Hb_004109_170 Hb_029879_130--Hb_004109_170 Hb_004635_100 Hb_004635_100 Hb_029879_130--Hb_004635_100 Hb_001902_140 Hb_001902_140 Hb_029879_130--Hb_001902_140 Hb_000614_160 Hb_000614_160 Hb_029879_130--Hb_000614_160 Hb_002408_020 Hb_002408_020 Hb_029879_130--Hb_002408_020 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_000260_030--Hb_004109_170 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_000260_030--Hb_001300_150 Hb_000260_030--Hb_000614_160 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_000240_090 Hb_000240_090 Hb_004635_100--Hb_000240_090 Hb_001059_030 Hb_001059_030 Hb_004635_100--Hb_001059_030 Hb_000915_090 Hb_000915_090 Hb_004635_100--Hb_000915_090 Hb_000676_180 Hb_000676_180 Hb_004635_100--Hb_000676_180 Hb_000120_680 Hb_000120_680 Hb_004635_100--Hb_000120_680 Hb_000703_350 Hb_000703_350 Hb_001902_140--Hb_000703_350 Hb_003050_220 Hb_003050_220 Hb_001902_140--Hb_003050_220 Hb_006420_080 Hb_006420_080 Hb_001902_140--Hb_006420_080 Hb_032202_190 Hb_032202_190 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_012019_010 Hb_012019_010 Hb_000614_160--Hb_012019_010 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180 Hb_000061_210 Hb_000061_210 Hb_002408_020--Hb_000061_210 Hb_002408_020--Hb_000260_030 Hb_004324_270 Hb_004324_270 Hb_002408_020--Hb_004324_270 Hb_012675_050 Hb_012675_050 Hb_002408_020--Hb_012675_050 Hb_001322_110 Hb_001322_110 Hb_002408_020--Hb_001322_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.265 50.3198 61.2457 64.2366 68.0101 59.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.689 125.948 134.212 44.0113 75.6045

CAGE analysis