Hb_029888_010

Information

Type -
Description -
Location Contig29888: 113-2314
Sequence    

Annotation

kegg
ID brp:103870565
description mediator of RNA polymerase II transcription subunit 27
nr
ID XP_009626583.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
swissprot
ID Q8RWM3
description Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana GN=MED27 PE=1 SV=1
trembl
ID M4ELS4
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra029744 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029888_010 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
2 Hb_000116_430 0.1103857939 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
3 Hb_130279_010 0.1360752904 - - PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 [Jatropha curcas]
4 Hb_001511_070 0.1361058999 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
5 Hb_009455_020 0.1400090229 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
6 Hb_070256_010 0.1448189882 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
7 Hb_000856_150 0.1556094411 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
8 Hb_001414_030 0.1609582434 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
9 Hb_000076_020 0.1614925464 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
10 Hb_001541_290 0.162564521 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
11 Hb_002631_030 0.1641631027 - - conserved hypothetical protein [Ricinus communis]
12 Hb_042202_030 0.1656922879 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
13 Hb_000165_160 0.1746235889 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
14 Hb_000529_170 0.1753757523 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
15 Hb_003494_230 0.1780151841 - - starch synthase isoform II [Manihot esculenta]
16 Hb_001357_300 0.1782160181 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000283_080 0.1794987764 - - -
18 Hb_000003_710 0.1797710245 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
19 Hb_001314_070 0.1798072311 - - conserved hypothetical protein [Ricinus communis]
20 Hb_031910_020 0.1810010248 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]

Gene co-expression network

sample Hb_029888_010 Hb_029888_010 Hb_000116_430 Hb_000116_430 Hb_029888_010--Hb_000116_430 Hb_130279_010 Hb_130279_010 Hb_029888_010--Hb_130279_010 Hb_001511_070 Hb_001511_070 Hb_029888_010--Hb_001511_070 Hb_009455_020 Hb_009455_020 Hb_029888_010--Hb_009455_020 Hb_070256_010 Hb_070256_010 Hb_029888_010--Hb_070256_010 Hb_000856_150 Hb_000856_150 Hb_029888_010--Hb_000856_150 Hb_042202_030 Hb_042202_030 Hb_000116_430--Hb_042202_030 Hb_001414_030 Hb_001414_030 Hb_000116_430--Hb_001414_030 Hb_000020_120 Hb_000020_120 Hb_000116_430--Hb_000020_120 Hb_000116_430--Hb_001511_070 Hb_000116_430--Hb_000856_150 Hb_010422_010 Hb_010422_010 Hb_130279_010--Hb_010422_010 Hb_002028_150 Hb_002028_150 Hb_130279_010--Hb_002028_150 Hb_002631_030 Hb_002631_030 Hb_130279_010--Hb_002631_030 Hb_001357_300 Hb_001357_300 Hb_130279_010--Hb_001357_300 Hb_000483_260 Hb_000483_260 Hb_130279_010--Hb_000483_260 Hb_001314_070 Hb_001314_070 Hb_130279_010--Hb_001314_070 Hb_000283_080 Hb_000283_080 Hb_001511_070--Hb_000283_080 Hb_005188_020 Hb_005188_020 Hb_001511_070--Hb_005188_020 Hb_002205_130 Hb_002205_130 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_001511_070--Hb_000856_150 Hb_007747_210 Hb_007747_210 Hb_009455_020--Hb_007747_210 Hb_000003_710 Hb_000003_710 Hb_009455_020--Hb_000003_710 Hb_000340_100 Hb_000340_100 Hb_009455_020--Hb_000340_100 Hb_000152_110 Hb_000152_110 Hb_009455_020--Hb_000152_110 Hb_004052_170 Hb_004052_170 Hb_009455_020--Hb_004052_170 Hb_002799_070 Hb_002799_070 Hb_009455_020--Hb_002799_070 Hb_003688_150 Hb_003688_150 Hb_070256_010--Hb_003688_150 Hb_070256_010--Hb_003020_220 Hb_000603_110 Hb_000603_110 Hb_070256_010--Hb_000603_110 Hb_009382_010 Hb_009382_010 Hb_070256_010--Hb_009382_010 Hb_002006_030 Hb_002006_030 Hb_070256_010--Hb_002006_030 Hb_002660_010 Hb_002660_010 Hb_070256_010--Hb_002660_010 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000856_150--Hb_000020_120 Hb_000856_150--Hb_002205_130 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.996736 0.787676 1.16904 0.180761 0.51864 0.59048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02419 1.55692 2.61995 2.47803 1.7228

CAGE analysis