Hb_029904_030

Information

Type -
Description -
Location Contig29904: 19913-22409
Sequence    

Annotation

kegg
ID rcu:RCOM_0895620
description aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_002517536.1
description aspartate aminotransferase, putative [Ricinus communis]
swissprot
ID O67781
description Aspartate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=aspC PE=3 SV=1
trembl
ID B9RUW7
description Aspartate aminotransferase, putative OS=Ricinus communis GN=RCOM_0895620 PE=3 SV=1
Gene Ontology
ID GO:0005829
description pyridoxal phosphate -dependent transferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31265: 19998-26421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029904_030 0.0 - - aspartate aminotransferase, putative [Ricinus communis]
2 Hb_000111_330 0.080325672 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
3 Hb_002798_050 0.0873448621 - - l-allo-threonine aldolase, putative [Ricinus communis]
4 Hb_015807_100 0.091448455 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_000684_270 0.0986629352 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
6 Hb_004871_020 0.1032057811 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
7 Hb_001633_030 0.1044729904 - - -
8 Hb_061195_020 0.1056961868 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
9 Hb_002234_070 0.1065409425 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
10 Hb_004052_050 0.1066101373 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
11 Hb_153112_030 0.1076383853 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
12 Hb_000317_070 0.1080734613 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
13 Hb_000334_210 0.1084122262 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
14 Hb_008771_030 0.1087061647 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
15 Hb_000340_570 0.109937302 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
16 Hb_000027_150 0.1111572428 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_029866_060 0.1112467546 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
18 Hb_000111_340 0.1128265943 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
19 Hb_144598_020 0.1129849955 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
20 Hb_003656_070 0.1131029421 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]

Gene co-expression network

sample Hb_029904_030 Hb_029904_030 Hb_000111_330 Hb_000111_330 Hb_029904_030--Hb_000111_330 Hb_002798_050 Hb_002798_050 Hb_029904_030--Hb_002798_050 Hb_015807_100 Hb_015807_100 Hb_029904_030--Hb_015807_100 Hb_000684_270 Hb_000684_270 Hb_029904_030--Hb_000684_270 Hb_004871_020 Hb_004871_020 Hb_029904_030--Hb_004871_020 Hb_001633_030 Hb_001633_030 Hb_029904_030--Hb_001633_030 Hb_003656_070 Hb_003656_070 Hb_000111_330--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_000111_330--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_000111_330--Hb_029866_060 Hb_011173_050 Hb_011173_050 Hb_000111_330--Hb_011173_050 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_129204_030 Hb_129204_030 Hb_000111_330--Hb_129204_030 Hb_002798_050--Hb_000111_330 Hb_002798_050--Hb_029866_060 Hb_002798_050--Hb_015807_100 Hb_002798_050--Hb_011173_050 Hb_002798_050--Hb_001633_030 Hb_000115_230 Hb_000115_230 Hb_015807_100--Hb_000115_230 Hb_007192_100 Hb_007192_100 Hb_015807_100--Hb_007192_100 Hb_000450_130 Hb_000450_130 Hb_015807_100--Hb_000450_130 Hb_000349_290 Hb_000349_290 Hb_015807_100--Hb_000349_290 Hb_001172_120 Hb_001172_120 Hb_015807_100--Hb_001172_120 Hb_002234_070 Hb_002234_070 Hb_000684_270--Hb_002234_070 Hb_000525_020 Hb_000525_020 Hb_000684_270--Hb_000525_020 Hb_008771_030 Hb_008771_030 Hb_000684_270--Hb_008771_030 Hb_077354_010 Hb_077354_010 Hb_000684_270--Hb_077354_010 Hb_000684_270--Hb_004871_020 Hb_000317_070 Hb_000317_070 Hb_004871_020--Hb_000317_070 Hb_153544_010 Hb_153544_010 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_007304_070 Hb_007304_070 Hb_001633_030--Hb_007304_070 Hb_000181_300 Hb_000181_300 Hb_001633_030--Hb_000181_300 Hb_002431_050 Hb_002431_050 Hb_001633_030--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_001633_030--Hb_010672_060 Hb_153112_030 Hb_153112_030 Hb_001633_030--Hb_153112_030 Hb_004459_040 Hb_004459_040 Hb_001633_030--Hb_004459_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9456 29.7212 19.3718 25.3906 11.7457 20.8878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.0663 86.9376 46.859 18.7878 17.9576

CAGE analysis