Hb_029920_050

Information

Type -
Description -
Location Contig29920: 56227-59257
Sequence    

Annotation

kegg
ID rcu:RCOM_0225650
description Receptor expression-enhancing protein, putative
nr
ID XP_012074349.1
description PREDICTED: putative HVA22-like protein g [Jatropha curcas]
swissprot
ID Q8GXE9
description HVA22-like protein j OS=Arabidopsis thaliana GN=HVA22J PE=2 SV=2
trembl
ID B9SVY7
description HVA22-like protein OS=Ricinus communis GN=RCOM_0225650 PE=3 SV=1
Gene Ontology
ID GO:0016020
description hva22-like protein g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31272: 56988-57877
cDNA
(Sanger)
(ID:Location)		 038_K01r.ab1: 56713-57326

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029920_050 0.0 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
2 Hb_001635_170 0.0660180308 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
3 Hb_033153_050 0.0686583853 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
4 Hb_008803_090 0.0733752119 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
5 Hb_007336_020 0.0750423598 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
6 Hb_000230_200 0.0755722976 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
7 Hb_033843_010 0.0766621435 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
8 Hb_011942_080 0.0780893965 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
9 Hb_001369_180 0.0785550536 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
10 Hb_000092_100 0.0829092062 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
11 Hb_000322_100 0.0848817914 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
12 Hb_002968_060 0.0850396076 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
13 Hb_005662_030 0.0851755423 - - protein with unknown function [Ricinus communis]
14 Hb_000645_050 0.0860269018 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
15 Hb_007477_080 0.088369515 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002784_050 0.0898319573 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
17 Hb_007632_110 0.0901148125 - - chromatin regulatory protein sir2, putative [Ricinus communis]
18 Hb_007218_080 0.0903908847 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
19 Hb_106552_050 0.0907090933 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
20 Hb_031939_010 0.0910116902 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_029920_050 Hb_029920_050 Hb_001635_170 Hb_001635_170 Hb_029920_050--Hb_001635_170 Hb_033153_050 Hb_033153_050 Hb_029920_050--Hb_033153_050 Hb_008803_090 Hb_008803_090 Hb_029920_050--Hb_008803_090 Hb_007336_020 Hb_007336_020 Hb_029920_050--Hb_007336_020 Hb_000230_200 Hb_000230_200 Hb_029920_050--Hb_000230_200 Hb_033843_010 Hb_033843_010 Hb_029920_050--Hb_033843_010 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_001635_170--Hb_008803_090 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_001862_190 Hb_001862_190 Hb_033153_050--Hb_001862_190 Hb_005306_110 Hb_005306_110 Hb_033153_050--Hb_005306_110 Hb_007894_140 Hb_007894_140 Hb_033153_050--Hb_007894_140 Hb_033153_050--Hb_033843_010 Hb_106552_050 Hb_106552_050 Hb_008803_090--Hb_106552_050 Hb_001926_030 Hb_001926_030 Hb_008803_090--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_008803_090--Hb_001595_030 Hb_005532_050 Hb_005532_050 Hb_008803_090--Hb_005532_050 Hb_001677_210 Hb_001677_210 Hb_008803_090--Hb_001677_210 Hb_007590_080 Hb_007590_080 Hb_007336_020--Hb_007590_080 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_011942_080 Hb_011942_080 Hb_007336_020--Hb_011942_080 Hb_001369_180 Hb_001369_180 Hb_007336_020--Hb_001369_180 Hb_008253_010 Hb_008253_010 Hb_007336_020--Hb_008253_010 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_003001_120 Hb_003001_120 Hb_000230_200--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0247 1.0043 1.01861 1.08629 1.73486 2.22869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74434 1.7036 1.15724 0.755234 0.594804

CAGE analysis