Hb_029921_020

Information

Type -
Description -
Location Contig29921: 6858-9254
Sequence    

Annotation

kegg
ID rcu:RCOM_1680510
description aminomethyltransferase, putative
nr
ID XP_012087099.1
description PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
swissprot
ID Q5T440
description Putative transferase CAF17, mitochondrial OS=Homo sapiens GN=IBA57 PE=1 SV=1
trembl
ID A0A067JNX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20753 PE=3 SV=1
Gene Ontology
ID GO:0008152
description transferase caf17 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029921_020 0.0 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
2 Hb_026206_020 0.1973994562 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
3 Hb_021420_010 0.197883404 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
4 Hb_007810_100 0.2109343781 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
5 Hb_000179_200 0.2119741263 - - unnamed protein product [Vitis vinifera]
6 Hb_000566_100 0.2125634829 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
7 Hb_000100_130 0.2158942544 - - hypothetical protein VITISV_026702 [Vitis vinifera]
8 Hb_002929_130 0.2206326871 - - phosphofructokinase [Hevea brasiliensis]
9 Hb_001606_080 0.2211192664 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
10 Hb_000397_120 0.2223961652 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
11 Hb_000850_050 0.223561906 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
12 Hb_000206_190 0.2236421782 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
13 Hb_013016_020 0.2294937307 - - Disease resistance protein RPS2, putative [Ricinus communis]
14 Hb_000927_040 0.2295407271 - - -
15 Hb_007933_020 0.2296706769 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
16 Hb_004097_120 0.2309266344 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_007603_010 0.2344373196 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000516_040 0.2361146161 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
19 Hb_000256_210 0.2364208589 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
20 Hb_004374_080 0.2365818242 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]

Gene co-expression network

sample Hb_029921_020 Hb_029921_020 Hb_026206_020 Hb_026206_020 Hb_029921_020--Hb_026206_020 Hb_021420_010 Hb_021420_010 Hb_029921_020--Hb_021420_010 Hb_007810_100 Hb_007810_100 Hb_029921_020--Hb_007810_100 Hb_000179_200 Hb_000179_200 Hb_029921_020--Hb_000179_200 Hb_000566_100 Hb_000566_100 Hb_029921_020--Hb_000566_100 Hb_000100_130 Hb_000100_130 Hb_029921_020--Hb_000100_130 Hb_006649_080 Hb_006649_080 Hb_026206_020--Hb_006649_080 Hb_033187_050 Hb_033187_050 Hb_026206_020--Hb_033187_050 Hb_009620_030 Hb_009620_030 Hb_026206_020--Hb_009620_030 Hb_000479_150 Hb_000479_150 Hb_026206_020--Hb_000479_150 Hb_011218_070 Hb_011218_070 Hb_026206_020--Hb_011218_070 Hb_008554_120 Hb_008554_120 Hb_026206_020--Hb_008554_120 Hb_000415_060 Hb_000415_060 Hb_021420_010--Hb_000415_060 Hb_000453_150 Hb_000453_150 Hb_021420_010--Hb_000453_150 Hb_003388_100 Hb_003388_100 Hb_021420_010--Hb_003388_100 Hb_000062_060 Hb_000062_060 Hb_021420_010--Hb_000062_060 Hb_000193_150 Hb_000193_150 Hb_021420_010--Hb_000193_150 Hb_000850_050 Hb_000850_050 Hb_007810_100--Hb_000850_050 Hb_018954_020 Hb_018954_020 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_007451_050 Hb_007451_050 Hb_000179_200--Hb_007451_050 Hb_000179_200--Hb_000566_100 Hb_000742_250 Hb_000742_250 Hb_000179_200--Hb_000742_250 Hb_000365_260 Hb_000365_260 Hb_000179_200--Hb_000365_260 Hb_000179_200--Hb_006649_080 Hb_028358_010 Hb_028358_010 Hb_000179_200--Hb_028358_010 Hb_002249_120 Hb_002249_120 Hb_000566_100--Hb_002249_120 Hb_000566_100--Hb_018954_020 Hb_002681_170 Hb_002681_170 Hb_000566_100--Hb_002681_170 Hb_001050_010 Hb_001050_010 Hb_000566_100--Hb_001050_010 Hb_008556_030 Hb_008556_030 Hb_000566_100--Hb_008556_030 Hb_002559_040 Hb_002559_040 Hb_000566_100--Hb_002559_040 Hb_004374_080 Hb_004374_080 Hb_000100_130--Hb_004374_080 Hb_012404_070 Hb_012404_070 Hb_000100_130--Hb_012404_070 Hb_000100_130--Hb_007810_100 Hb_000100_130--Hb_018954_020 Hb_010925_020 Hb_010925_020 Hb_000100_130--Hb_010925_020 Hb_000100_130--Hb_000850_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71179 0.227758 0.698213 0.518401 0.521356 1.0736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0546024 0.591432 0.420236 0.437474

CAGE analysis