Hb_029921_040

Information

Type -
Description -
Location Contig29921: 20428-22693
Sequence    

Annotation

kegg
ID rcu:RCOM_1680650
description hypothetical protein
nr
ID XP_002509615.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBT1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1680650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31282: 20551-21905 , PASA_asmbl_31283: 21930-23371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029921_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000189_340 0.0852644972 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
3 Hb_002687_130 0.0880867636 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
4 Hb_002495_040 0.0893306185 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
5 Hb_000373_240 0.0941121643 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
6 Hb_114343_010 0.0953238381 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
7 Hb_000272_020 0.0963555602 - - oxidoreductase, putative [Ricinus communis]
8 Hb_000157_030 0.09704142 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
9 Hb_010691_060 0.0971073003 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_002391_300 0.1022164888 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
11 Hb_004127_010 0.102472767 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
12 Hb_001936_080 0.1035762121 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
13 Hb_000103_080 0.1037835794 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
14 Hb_012008_020 0.103853163 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
15 Hb_001766_150 0.1040255488 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
16 Hb_070739_010 0.1043425375 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
17 Hb_012092_010 0.1047256205 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
18 Hb_003363_120 0.1050444992 - - GTP-binding family protein [Populus trichocarpa]
19 Hb_005618_160 0.1051905081 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
20 Hb_028227_020 0.1065070914 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029921_040 Hb_029921_040 Hb_000189_340 Hb_000189_340 Hb_029921_040--Hb_000189_340 Hb_002687_130 Hb_002687_130 Hb_029921_040--Hb_002687_130 Hb_002495_040 Hb_002495_040 Hb_029921_040--Hb_002495_040 Hb_000373_240 Hb_000373_240 Hb_029921_040--Hb_000373_240 Hb_114343_010 Hb_114343_010 Hb_029921_040--Hb_114343_010 Hb_000272_020 Hb_000272_020 Hb_029921_040--Hb_000272_020 Hb_001766_150 Hb_001766_150 Hb_000189_340--Hb_001766_150 Hb_001047_100 Hb_001047_100 Hb_000189_340--Hb_001047_100 Hb_105386_010 Hb_105386_010 Hb_000189_340--Hb_105386_010 Hb_001358_030 Hb_001358_030 Hb_000189_340--Hb_001358_030 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010 Hb_000690_130 Hb_000690_130 Hb_002687_130--Hb_000690_130 Hb_028227_020 Hb_028227_020 Hb_002687_130--Hb_028227_020 Hb_006120_070 Hb_006120_070 Hb_002687_130--Hb_006120_070 Hb_009694_010 Hb_009694_010 Hb_002687_130--Hb_009694_010 Hb_006064_010 Hb_006064_010 Hb_002687_130--Hb_006064_010 Hb_000465_430 Hb_000465_430 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_002391_300 Hb_002391_300 Hb_000373_240--Hb_002391_300 Hb_000889_020 Hb_000889_020 Hb_000373_240--Hb_000889_020 Hb_003406_010 Hb_003406_010 Hb_000373_240--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000373_240--Hb_007218_080 Hb_001789_240 Hb_001789_240 Hb_000373_240--Hb_001789_240 Hb_000373_240--Hb_000690_130 Hb_012008_020 Hb_012008_020 Hb_114343_010--Hb_012008_020 Hb_144598_030 Hb_144598_030 Hb_114343_010--Hb_144598_030 Hb_114343_010--Hb_000373_240 Hb_010691_060 Hb_010691_060 Hb_114343_010--Hb_010691_060 Hb_114343_010--Hb_002391_300 Hb_002253_100 Hb_002253_100 Hb_000272_020--Hb_002253_100 Hb_001579_270 Hb_001579_270 Hb_000272_020--Hb_001579_270 Hb_000329_140 Hb_000329_140 Hb_000272_020--Hb_000329_140 Hb_000103_080 Hb_000103_080 Hb_000272_020--Hb_000103_080 Hb_000003_080 Hb_000003_080 Hb_000272_020--Hb_000003_080 Hb_020581_010 Hb_020581_010 Hb_000272_020--Hb_020581_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35982 2.18349 3.81619 2.88147 5.83215 9.13908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.2993 7.16085 1.8062 2.9471 2.90098

CAGE analysis