Hb_029977_040

Information

Type -
Description -
Location Contig29977: 50403-58101
Sequence    

Annotation

kegg
ID rcu:RCOM_1280790
description hypothetical protein
nr
ID XP_012079786.1
description PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KI90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15214 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31325: 50478-52364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029977_040 0.0 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
2 Hb_000099_040 0.0467002906 - - unnamed protein product [Coffea canephora]
3 Hb_002768_050 0.0630461186 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
4 Hb_001617_040 0.0637893648 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_004976_010 0.0638889677 - - hypothetical protein RCOM_1429110 [Ricinus communis]
6 Hb_001279_120 0.0639302599 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
7 Hb_005542_140 0.0664196171 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
8 Hb_001673_050 0.0666701409 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
9 Hb_001430_080 0.0674855338 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
10 Hb_000243_210 0.0677656622 - - protein with unknown function [Ricinus communis]
11 Hb_002085_030 0.067986134 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
12 Hb_000329_370 0.069652869 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
13 Hb_001089_050 0.0700122331 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
14 Hb_002542_130 0.0705856651 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
15 Hb_001545_150 0.0712772406 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
16 Hb_000879_040 0.0732563471 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
17 Hb_002000_070 0.0734753013 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
18 Hb_000008_240 0.0738311362 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000645_170 0.0738680964 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003943_010 0.0741169187 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_029977_040 Hb_029977_040 Hb_000099_040 Hb_000099_040 Hb_029977_040--Hb_000099_040 Hb_002768_050 Hb_002768_050 Hb_029977_040--Hb_002768_050 Hb_001617_040 Hb_001617_040 Hb_029977_040--Hb_001617_040 Hb_004976_010 Hb_004976_010 Hb_029977_040--Hb_004976_010 Hb_001279_120 Hb_001279_120 Hb_029977_040--Hb_001279_120 Hb_005542_140 Hb_005542_140 Hb_029977_040--Hb_005542_140 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_000110_350 Hb_000110_350 Hb_002768_050--Hb_000110_350 Hb_000445_060 Hb_000445_060 Hb_002768_050--Hb_000445_060 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020 Hb_003929_210 Hb_003929_210 Hb_002768_050--Hb_003929_210 Hb_002000_070 Hb_002000_070 Hb_001617_040--Hb_002000_070 Hb_001617_040--Hb_001279_120 Hb_007810_110 Hb_007810_110 Hb_001617_040--Hb_007810_110 Hb_003120_080 Hb_003120_080 Hb_001617_040--Hb_003120_080 Hb_002217_250 Hb_002217_250 Hb_001617_040--Hb_002217_250 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_001545_150 Hb_001545_150 Hb_001279_120--Hb_001545_150 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6265 14.046 7.6469 6.4492 8.10464 6.55641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.06336 4.98536 4.39751 7.55621 9.08421

CAGE analysis