Hb_029982_010

Information

Type -
Description -
Location Contig29982: 3821-4400
Sequence    

Annotation

kegg
ID cic:CICLE_v10022677mg
description hypothetical protein
nr
ID XP_006421743.1
description hypothetical protein CICLE_v10006145mg [Citrus clementina]
swissprot
ID P62302
description 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1
trembl
ID A0A067FDB2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031857mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31334: 3996-4449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029982_010 0.0 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
2 Hb_086859_010 0.1233308021 - - -
3 Hb_042404_010 0.1714677195 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_188382_010 0.1851006334 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_004048_010 0.193237194 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
6 Hb_001405_130 0.1953241471 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
7 Hb_142522_010 0.1968524978 - - -
8 Hb_000562_080 0.2019101033 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015675_060 0.2026660884 - - -
10 Hb_029888_020 0.2081984773 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
11 Hb_000221_100 0.2082666509 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
12 Hb_056768_010 0.2104647813 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
13 Hb_002863_010 0.2105504256 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
14 Hb_001821_120 0.2128340314 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
15 Hb_002742_010 0.213917756 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
16 Hb_003029_080 0.2149551082 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
17 Hb_004502_080 0.2159219487 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
18 Hb_000329_530 0.2166843292 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
19 Hb_004545_160 0.2181517628 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_008078_030 0.2187690244 - - -

Gene co-expression network

sample Hb_029982_010 Hb_029982_010 Hb_086859_010 Hb_086859_010 Hb_029982_010--Hb_086859_010 Hb_042404_010 Hb_042404_010 Hb_029982_010--Hb_042404_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_142522_010 Hb_142522_010 Hb_029982_010--Hb_142522_010 Hb_011161_070 Hb_011161_070 Hb_086859_010--Hb_011161_070 Hb_086859_010--Hb_142522_010 Hb_086859_010--Hb_042404_010 Hb_000221_100 Hb_000221_100 Hb_086859_010--Hb_000221_100 Hb_000329_530 Hb_000329_530 Hb_086859_010--Hb_000329_530 Hb_000445_330 Hb_000445_330 Hb_042404_010--Hb_000445_330 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500 Hb_070820_010 Hb_070820_010 Hb_042404_010--Hb_070820_010 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_004048_010--Hb_001405_130 Hb_000134_020 Hb_000134_020 Hb_004048_010--Hb_000134_020 Hb_003638_080 Hb_003638_080 Hb_004048_010--Hb_003638_080 Hb_005199_010 Hb_005199_010 Hb_004048_010--Hb_005199_010 Hb_029888_020 Hb_029888_020 Hb_004048_010--Hb_029888_020 Hb_001405_130--Hb_000562_080 Hb_013492_010 Hb_013492_010 Hb_001405_130--Hb_013492_010 Hb_008442_010 Hb_008442_010 Hb_001405_130--Hb_008442_010 Hb_001405_130--Hb_005199_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_008078_030 Hb_008078_030 Hb_142522_010--Hb_008078_030 Hb_001021_230 Hb_001021_230 Hb_142522_010--Hb_001021_230 Hb_142522_010--Hb_015675_060 Hb_004502_080 Hb_004502_080 Hb_142522_010--Hb_004502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
177.413 49.5881 25.3248 28.4299 266.777 358.135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
387.657 505.119 0 0.739241 0

CAGE analysis