Hb_030088_010

Information

Type -
Description -
Location Contig30088: 770-3671
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21660g
description POPTRDRAFT_815202; basic blue copper family protein
nr
ID XP_002298184.1
description basic blue copper family protein [Populus trichocarpa]
swissprot
ID Q8LG89
description Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2
trembl
ID B9GEY2
description Basic blue copper family protein OS=Populus trichocarpa GN=POPTR_0001s21660g PE=4 SV=1
Gene Ontology
ID GO:0009055
description basic blue

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030088_010 0.0 - - basic blue copper family protein [Populus trichocarpa]
2 Hb_005144_140 0.1199700859 - - conserved hypothetical protein [Ricinus communis]
3 Hb_162815_010 0.1213631397 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_000917_070 0.1222544273 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004397_010 0.1251846687 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_001091_040 0.1261975864 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
7 Hb_039946_040 0.1268199217 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
8 Hb_006275_040 0.1271636737 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
9 Hb_059226_020 0.1295287194 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
10 Hb_001863_520 0.1309205057 - - conserved hypothetical protein [Ricinus communis]
11 Hb_110631_010 0.1374304628 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
12 Hb_006351_040 0.1417600855 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004102_150 0.1468891864 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
14 Hb_001091_010 0.1504175586 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
15 Hb_000320_240 0.1507763601 - - multicopper oxidase, putative [Ricinus communis]
16 Hb_003057_040 0.1517921307 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
17 Hb_000935_060 0.1535380154 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
18 Hb_002400_480 0.1577908264 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
19 Hb_005348_020 0.1597847753 - - conserved hypothetical protein [Ricinus communis]
20 Hb_073870_010 0.1597851561 - - hypothetical protein RCOM_0725510 [Ricinus communis]

Gene co-expression network

sample Hb_030088_010 Hb_030088_010 Hb_005144_140 Hb_005144_140 Hb_030088_010--Hb_005144_140 Hb_162815_010 Hb_162815_010 Hb_030088_010--Hb_162815_010 Hb_000917_070 Hb_000917_070 Hb_030088_010--Hb_000917_070 Hb_004397_010 Hb_004397_010 Hb_030088_010--Hb_004397_010 Hb_001091_040 Hb_001091_040 Hb_030088_010--Hb_001091_040 Hb_039946_040 Hb_039946_040 Hb_030088_010--Hb_039946_040 Hb_005144_140--Hb_000917_070 Hb_004102_150 Hb_004102_150 Hb_005144_140--Hb_004102_150 Hb_006275_040 Hb_006275_040 Hb_005144_140--Hb_006275_040 Hb_000935_060 Hb_000935_060 Hb_005144_140--Hb_000935_060 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010 Hb_005348_020 Hb_005348_020 Hb_005144_140--Hb_005348_020 Hb_001863_520 Hb_001863_520 Hb_162815_010--Hb_001863_520 Hb_049438_020 Hb_049438_020 Hb_162815_010--Hb_049438_020 Hb_162815_010--Hb_004397_010 Hb_001856_260 Hb_001856_260 Hb_162815_010--Hb_001856_260 Hb_120357_010 Hb_120357_010 Hb_162815_010--Hb_120357_010 Hb_000917_070--Hb_004102_150 Hb_000917_070--Hb_000935_060 Hb_000917_070--Hb_005348_020 Hb_000917_070--Hb_006275_040 Hb_000740_140 Hb_000740_140 Hb_000917_070--Hb_000740_140 Hb_059226_020 Hb_059226_020 Hb_004397_010--Hb_059226_020 Hb_004397_010--Hb_120357_010 Hb_006351_040 Hb_006351_040 Hb_004397_010--Hb_006351_040 Hb_066207_020 Hb_066207_020 Hb_004397_010--Hb_066207_020 Hb_001091_040--Hb_006351_040 Hb_000139_460 Hb_000139_460 Hb_001091_040--Hb_000139_460 Hb_001091_040--Hb_039946_040 Hb_004926_010 Hb_004926_010 Hb_001091_040--Hb_004926_010 Hb_004031_060 Hb_004031_060 Hb_001091_040--Hb_004031_060 Hb_002020_010 Hb_002020_010 Hb_001091_040--Hb_002020_010 Hb_039946_040--Hb_006351_040 Hb_039946_040--Hb_059226_020 Hb_004319_100 Hb_004319_100 Hb_039946_040--Hb_004319_100 Hb_039946_040--Hb_004926_010 Hb_000194_030 Hb_000194_030 Hb_039946_040--Hb_000194_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.558821 10.6431 106.393 0 1.07693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 25.1628 2.32177

CAGE analysis