Hb_030116_010

Information

Type -
Description -
Location Contig30116: 3163-7058
Sequence    

Annotation

kegg
ID rcu:RCOM_0849630
description F-box protein, atfbl3, putative
nr
ID XP_002526701.1
description F-box protein, atfbl3, putative [Ricinus communis]
swissprot
ID Q8RWU5
description F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1
trembl
ID B9SL32
description F-box protein, atfbl3, putative OS=Ricinus communis GN=RCOM_0849630 PE=4 SV=1
Gene Ontology
ID GO:0009407
description f-box lrr-repeat protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31715: 3334-6819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030116_010 0.0 - - F-box protein, atfbl3, putative [Ricinus communis]
2 Hb_000672_030 0.1085064337 - - PREDICTED: uncharacterized protein LOC105628931 isoform X1 [Jatropha curcas]
3 Hb_009393_180 0.1228447453 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
4 Hb_000134_340 0.1242622467 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
5 Hb_009545_090 0.1404678653 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
6 Hb_000363_370 0.1415012007 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
7 Hb_000608_280 0.142033814 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
8 Hb_006711_070 0.1422059515 - - hypothetical protein RCOM_1336320 [Ricinus communis]
9 Hb_046117_010 0.1433518532 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
10 Hb_000086_340 0.1442235981 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
11 Hb_006198_020 0.1452053457 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
12 Hb_001638_030 0.146555148 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
13 Hb_000925_030 0.1465682963 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_002071_050 0.1466135951 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
15 Hb_005015_080 0.1466236919 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
16 Hb_000186_200 0.1470350614 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
17 Hb_003925_040 0.1472629343 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
18 Hb_003078_030 0.149520675 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
19 Hb_000953_050 0.1518074293 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
20 Hb_004917_040 0.1520249725 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]

Gene co-expression network

sample Hb_030116_010 Hb_030116_010 Hb_000672_030 Hb_000672_030 Hb_030116_010--Hb_000672_030 Hb_009393_180 Hb_009393_180 Hb_030116_010--Hb_009393_180 Hb_000134_340 Hb_000134_340 Hb_030116_010--Hb_000134_340 Hb_009545_090 Hb_009545_090 Hb_030116_010--Hb_009545_090 Hb_000363_370 Hb_000363_370 Hb_030116_010--Hb_000363_370 Hb_000608_280 Hb_000608_280 Hb_030116_010--Hb_000608_280 Hb_001860_020 Hb_001860_020 Hb_000672_030--Hb_001860_020 Hb_001225_030 Hb_001225_030 Hb_000672_030--Hb_001225_030 Hb_001247_120 Hb_001247_120 Hb_000672_030--Hb_001247_120 Hb_003175_030 Hb_003175_030 Hb_000672_030--Hb_003175_030 Hb_003682_030 Hb_003682_030 Hb_000672_030--Hb_003682_030 Hb_004917_040 Hb_004917_040 Hb_009393_180--Hb_004917_040 Hb_075230_010 Hb_075230_010 Hb_009393_180--Hb_075230_010 Hb_155599_010 Hb_155599_010 Hb_009393_180--Hb_155599_010 Hb_000211_120 Hb_000211_120 Hb_009393_180--Hb_000211_120 Hb_046117_010 Hb_046117_010 Hb_009393_180--Hb_046117_010 Hb_002119_090 Hb_002119_090 Hb_000134_340--Hb_002119_090 Hb_003078_030 Hb_003078_030 Hb_000134_340--Hb_003078_030 Hb_000134_340--Hb_000608_280 Hb_006738_050 Hb_006738_050 Hb_000134_340--Hb_006738_050 Hb_001009_090 Hb_001009_090 Hb_000134_340--Hb_001009_090 Hb_000134_340--Hb_000363_370 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_007943_050 Hb_007943_050 Hb_009545_090--Hb_007943_050 Hb_002232_480 Hb_002232_480 Hb_009545_090--Hb_002232_480 Hb_002869_050 Hb_002869_050 Hb_009545_090--Hb_002869_050 Hb_003925_040 Hb_003925_040 Hb_009545_090--Hb_003925_040 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040 Hb_007894_130 Hb_007894_130 Hb_000363_370--Hb_007894_130 Hb_000406_110 Hb_000406_110 Hb_000363_370--Hb_000406_110 Hb_000059_020 Hb_000059_020 Hb_000363_370--Hb_000059_020 Hb_144744_010 Hb_144744_010 Hb_000363_370--Hb_144744_010 Hb_009028_010 Hb_009028_010 Hb_000363_370--Hb_009028_010 Hb_001369_780 Hb_001369_780 Hb_000608_280--Hb_001369_780 Hb_000608_280--Hb_001009_090 Hb_000608_280--Hb_004917_040 Hb_001376_010 Hb_001376_010 Hb_000608_280--Hb_001376_010 Hb_002248_130 Hb_002248_130 Hb_000608_280--Hb_002248_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.12003 24.4604 8.32109 9.90025 3.63824 8.5754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6368 7.55434 3.19413 2.4177 3.68016

CAGE analysis