Hb_030131_040

Information

Type -
Description -
Location Contig30131: 33641-35834
Sequence    

Annotation

kegg
ID rcu:RCOM_1600880
description ribosome biogenesis protein tsr1, putative
nr
ID XP_002510662.1
description ribosome biogenesis protein tsr1, putative [Ricinus communis]
swissprot
ID O13956
description Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
trembl
ID B9R8L9
description Ribosome biogenesis protein tsr1, putative OS=Ricinus communis GN=RCOM_1600880 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pre-rrna-processing protein tsr1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31733: 32208-32902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030131_040 0.0 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
2 Hb_002273_130 0.0574114115 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
3 Hb_001341_120 0.0593471425 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
4 Hb_001085_320 0.066880468 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
5 Hb_000913_050 0.0699945465 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
6 Hb_001488_410 0.0715033442 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
7 Hb_001541_090 0.0742213907 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_000212_240 0.0753747563 - - short-chain dehydrogenase, putative [Ricinus communis]
9 Hb_003464_020 0.0769030272 - - srpk, putative [Ricinus communis]
10 Hb_006252_040 0.0769356013 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
11 Hb_000866_470 0.0776201039 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
12 Hb_000059_140 0.0781463537 - - rnase h, putative [Ricinus communis]
13 Hb_000538_100 0.0793016316 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004994_040 0.0801538675 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_103012_010 0.0805705152 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_001444_010 0.0807114988 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
17 Hb_010381_060 0.0807941453 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
18 Hb_007262_020 0.0818852034 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
19 Hb_000085_150 0.0822056813 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
20 Hb_000123_090 0.0834112301 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]

Gene co-expression network

sample Hb_030131_040 Hb_030131_040 Hb_002273_130 Hb_002273_130 Hb_030131_040--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_030131_040--Hb_001341_120 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_000913_050 Hb_000913_050 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090 Hb_002273_130--Hb_001341_120 Hb_002273_130--Hb_001541_090 Hb_000076_270 Hb_000076_270 Hb_002273_130--Hb_000076_270 Hb_000059_150 Hb_000059_150 Hb_002273_130--Hb_000059_150 Hb_001300_070 Hb_001300_070 Hb_002273_130--Hb_001300_070 Hb_001341_120--Hb_000076_270 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_001341_120--Hb_000913_050 Hb_000868_060 Hb_000868_060 Hb_001085_320--Hb_000868_060 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_015763_030 Hb_015763_030 Hb_001085_320--Hb_015763_030 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_001541_090--Hb_001341_120 Hb_008103_040 Hb_008103_040 Hb_001541_090--Hb_008103_040 Hb_001541_090--Hb_001488_410 Hb_001541_090--Hb_003464_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.64085 2.06345 2.6835 2.64307 4.85256 5.83999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00897 2.14125 1.59519 2.15787 1.92765

CAGE analysis