Hb_030291_020

Information

Type -
Description -
Location Contig30291: 22182-24017
Sequence    

Annotation

kegg
ID rcu:RCOM_0476750
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_012064650.1
description PREDICTED: protein argonaute 5 isoform X2 [Jatropha curcas]
swissprot
ID Q9SJK3
description Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2
trembl
ID A0A067LH64
description Protein argonaute OS=Jatropha curcas GN=JCGZ_05397 PE=3 SV=1
Gene Ontology
ID GO:0044699
description argonaute family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31953: 22064-22659 , PASA_asmbl_31955: 23200-29548
cDNA
(Sanger)
(ID:Location)		 010_L04.ab1: 22064-22659

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030291_020 0.0 - - PREDICTED: protein argonaute 5 isoform X2 [Jatropha curcas]
2 Hb_000392_100 0.1972547318 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
3 Hb_015401_030 0.2131576614 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_007603_010 0.2342685479 - - conserved hypothetical protein [Ricinus communis]
5 Hb_139859_010 0.234578585 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
6 Hb_005914_090 0.2394869519 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_000103_360 0.244007515 - - -
8 Hb_007694_050 0.2446124128 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
9 Hb_005410_040 0.2451694275 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
10 Hb_004342_030 0.2455290132 - - phosphofructokinase [Hevea brasiliensis]
11 Hb_000041_020 0.2473974373 - - hypothetical protein POPTR_0009s11640g [Populus trichocarpa]
12 Hb_004883_060 0.2481466486 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
13 Hb_000139_240 0.248745153 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
14 Hb_051407_010 0.2528779184 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
15 Hb_000497_140 0.2535572349 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
16 Hb_000453_080 0.253799874 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_003299_090 0.2557504 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
18 Hb_001952_070 0.2582497057 - - 40S ribosomal protein S6B [Hevea brasiliensis]
19 Hb_004137_070 0.2586354225 - - -
20 Hb_000252_250 0.2590584451 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_030291_020 Hb_030291_020 Hb_000392_100 Hb_000392_100 Hb_030291_020--Hb_000392_100 Hb_015401_030 Hb_015401_030 Hb_030291_020--Hb_015401_030 Hb_007603_010 Hb_007603_010 Hb_030291_020--Hb_007603_010 Hb_139859_010 Hb_139859_010 Hb_030291_020--Hb_139859_010 Hb_005914_090 Hb_005914_090 Hb_030291_020--Hb_005914_090 Hb_000103_360 Hb_000103_360 Hb_030291_020--Hb_000103_360 Hb_000392_100--Hb_015401_030 Hb_002248_140 Hb_002248_140 Hb_000392_100--Hb_002248_140 Hb_000139_240 Hb_000139_240 Hb_000392_100--Hb_000139_240 Hb_002493_100 Hb_002493_100 Hb_000392_100--Hb_002493_100 Hb_002270_010 Hb_002270_010 Hb_000392_100--Hb_002270_010 Hb_000186_040 Hb_000186_040 Hb_000392_100--Hb_000186_040 Hb_015401_030--Hb_005914_090 Hb_113216_010 Hb_113216_010 Hb_015401_030--Hb_113216_010 Hb_003299_090 Hb_003299_090 Hb_015401_030--Hb_003299_090 Hb_057490_010 Hb_057490_010 Hb_015401_030--Hb_057490_010 Hb_001523_010 Hb_001523_010 Hb_015401_030--Hb_001523_010 Hb_001439_180 Hb_001439_180 Hb_015401_030--Hb_001439_180 Hb_007904_080 Hb_007904_080 Hb_007603_010--Hb_007904_080 Hb_000041_020 Hb_000041_020 Hb_007603_010--Hb_000041_020 Hb_109168_010 Hb_109168_010 Hb_007603_010--Hb_109168_010 Hb_000850_050 Hb_000850_050 Hb_007603_010--Hb_000850_050 Hb_001484_120 Hb_001484_120 Hb_007603_010--Hb_001484_120 Hb_000099_210 Hb_000099_210 Hb_007603_010--Hb_000099_210 Hb_171788_010 Hb_171788_010 Hb_139859_010--Hb_171788_010 Hb_139859_010--Hb_003299_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_000270_020 Hb_000270_020 Hb_139859_010--Hb_000270_020 Hb_006455_080 Hb_006455_080 Hb_139859_010--Hb_006455_080 Hb_005914_090--Hb_003299_090 Hb_005914_090--Hb_000453_080 Hb_012016_020 Hb_012016_020 Hb_005914_090--Hb_012016_020 Hb_000347_150 Hb_000347_150 Hb_005914_090--Hb_000347_150 Hb_001431_070 Hb_001431_070 Hb_005914_090--Hb_001431_070 Hb_006901_040 Hb_006901_040 Hb_000103_360--Hb_006901_040 Hb_002233_090 Hb_002233_090 Hb_000103_360--Hb_002233_090 Hb_000103_360--Hb_000453_080 Hb_000025_310 Hb_000025_310 Hb_000103_360--Hb_000025_310 Hb_000103_360--Hb_005914_090 Hb_001678_020 Hb_001678_020 Hb_000103_360--Hb_001678_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22565 0.456331 0 0.43483 0.918374 2.48315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0578855 0.273131 1.24745 1.1198 0

CAGE analysis