Hb_030291_030

Information

Type -
Description -
Location Contig30291: 27954-29090
Sequence    

Annotation

kegg
ID sot:102595755
description agmatine coumaroyltransferase-2-like
nr
ID XP_012064646.1
description PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
swissprot
ID A9ZPJ7
description Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1
trembl
ID A0A067L631
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05393 PE=4 SV=1
Gene Ontology
ID GO:0016747
description agmatine coumaroyltransferase-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31955: 23200-29548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030291_030 0.0 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
2 Hb_000500_110 0.1554168543 - - Blue copper protein precursor, putative [Ricinus communis]
3 Hb_020025_020 0.1760246937 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
4 Hb_159769_010 0.1772708859 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
5 Hb_022250_050 0.1807623445 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000007_110 0.1977378026 - - PREDICTED: peroxidase 11 [Jatropha curcas]
7 Hb_003446_030 0.202500038 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
8 Hb_145535_010 0.2050208607 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_002161_020 0.2057920561 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
10 Hb_043903_010 0.2077067046 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
11 Hb_000045_230 0.2099224795 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
12 Hb_000375_040 0.2113201802 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
13 Hb_000213_130 0.211958247 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
14 Hb_000135_050 0.2128458159 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
15 Hb_008092_090 0.2128773799 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
16 Hb_000589_280 0.2132707515 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
17 Hb_000828_030 0.2141287472 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_000462_100 0.2143879524 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_010839_040 0.2144267846 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
20 Hb_100786_010 0.2151554434 - - hypothetical protein B456_008G202600 [Gossypium raimondii]

Gene co-expression network

sample Hb_030291_030 Hb_030291_030 Hb_000500_110 Hb_000500_110 Hb_030291_030--Hb_000500_110 Hb_020025_020 Hb_020025_020 Hb_030291_030--Hb_020025_020 Hb_159769_010 Hb_159769_010 Hb_030291_030--Hb_159769_010 Hb_022250_050 Hb_022250_050 Hb_030291_030--Hb_022250_050 Hb_000007_110 Hb_000007_110 Hb_030291_030--Hb_000007_110 Hb_003446_030 Hb_003446_030 Hb_030291_030--Hb_003446_030 Hb_003057_080 Hb_003057_080 Hb_000500_110--Hb_003057_080 Hb_000926_130 Hb_000926_130 Hb_000500_110--Hb_000926_130 Hb_000045_230 Hb_000045_230 Hb_000500_110--Hb_000045_230 Hb_000140_160 Hb_000140_160 Hb_000500_110--Hb_000140_160 Hb_007072_020 Hb_007072_020 Hb_000500_110--Hb_007072_020 Hb_000589_280 Hb_000589_280 Hb_020025_020--Hb_000589_280 Hb_100786_010 Hb_100786_010 Hb_020025_020--Hb_100786_010 Hb_010839_040 Hb_010839_040 Hb_020025_020--Hb_010839_040 Hb_000462_100 Hb_000462_100 Hb_020025_020--Hb_000462_100 Hb_002835_030 Hb_002835_030 Hb_020025_020--Hb_002835_030 Hb_002758_020 Hb_002758_020 Hb_020025_020--Hb_002758_020 Hb_039655_010 Hb_039655_010 Hb_159769_010--Hb_039655_010 Hb_000281_200 Hb_000281_200 Hb_159769_010--Hb_000281_200 Hb_000135_050 Hb_000135_050 Hb_159769_010--Hb_000135_050 Hb_159769_010--Hb_022250_050 Hb_005356_010 Hb_005356_010 Hb_159769_010--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_159769_010--Hb_007527_020 Hb_002553_170 Hb_002553_170 Hb_022250_050--Hb_002553_170 Hb_001040_190 Hb_001040_190 Hb_022250_050--Hb_001040_190 Hb_001930_060 Hb_001930_060 Hb_022250_050--Hb_001930_060 Hb_002835_020 Hb_002835_020 Hb_022250_050--Hb_002835_020 Hb_001301_020 Hb_001301_020 Hb_022250_050--Hb_001301_020 Hb_001140_330 Hb_001140_330 Hb_022250_050--Hb_001140_330 Hb_000007_110--Hb_000135_050 Hb_000010_120 Hb_000010_120 Hb_000007_110--Hb_000010_120 Hb_000007_110--Hb_159769_010 Hb_176979_010 Hb_176979_010 Hb_000007_110--Hb_176979_010 Hb_006478_180 Hb_006478_180 Hb_000007_110--Hb_006478_180 Hb_003538_020 Hb_003538_020 Hb_000007_110--Hb_003538_020 Hb_001032_060 Hb_001032_060 Hb_003446_030--Hb_001032_060 Hb_028013_010 Hb_028013_010 Hb_003446_030--Hb_028013_010 Hb_145535_010 Hb_145535_010 Hb_003446_030--Hb_145535_010 Hb_018709_010 Hb_018709_010 Hb_003446_030--Hb_018709_010 Hb_000419_080 Hb_000419_080 Hb_003446_030--Hb_000419_080 Hb_000445_020 Hb_000445_020 Hb_003446_030--Hb_000445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0874786 0 0.0441467 0 0.0569769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0449468 0.082175 1.77579 0

CAGE analysis