Hb_030312_030

Information

Type -
Description -
Location Contig30312: 17567-21936
Sequence    

Annotation

kegg
ID rcu:RCOM_0774220
description peptidyl-prolyl cis-trans isomerase d, ppid, putative (EC:5.2.1.8)
nr
ID XP_012072447.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
swissprot
ID Q9C566
description Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1
trembl
ID A0A067L193
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04878 PE=4 SV=1
Gene Ontology
ID GO:0005829
description peptidyl-prolyl cis-trans isomerase cyp40 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31980: 17553-21946 , PASA_asmbl_31981: 21094-21824
cDNA
(Sanger)
(ID:Location)		 040_M18.ab1: 17553-19420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030312_030 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
2 Hb_001195_370 0.0905756527 - - -
3 Hb_003783_050 0.098099498 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001054_060 0.1030703832 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
5 Hb_000941_120 0.1043646494 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
6 Hb_003006_080 0.1049710086 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_002805_090 0.1058585594 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000997_320 0.1108813447 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
9 Hb_000768_150 0.1117963255 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
10 Hb_000157_140 0.1152682746 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_011174_080 0.1169524399 - - PREDICTED: sulfite oxidase [Jatropha curcas]
12 Hb_000066_040 0.1189893469 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_001916_150 0.1215082761 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
14 Hb_005116_140 0.1266225439 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
15 Hb_036388_010 0.1282868654 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
16 Hb_187959_010 0.129131806 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
17 Hb_000977_150 0.129686428 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
18 Hb_000120_740 0.1301836783 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
19 Hb_001235_130 0.1306131982 - - -
20 Hb_009193_010 0.1313971333 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]

Gene co-expression network

sample Hb_030312_030 Hb_030312_030 Hb_001195_370 Hb_001195_370 Hb_030312_030--Hb_001195_370 Hb_003783_050 Hb_003783_050 Hb_030312_030--Hb_003783_050 Hb_001054_060 Hb_001054_060 Hb_030312_030--Hb_001054_060 Hb_000941_120 Hb_000941_120 Hb_030312_030--Hb_000941_120 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_000997_290 Hb_000997_290 Hb_001195_370--Hb_000997_290 Hb_000329_080 Hb_000329_080 Hb_001195_370--Hb_000329_080 Hb_000997_320 Hb_000997_320 Hb_001195_370--Hb_000997_320 Hb_000366_030 Hb_000366_030 Hb_001195_370--Hb_000366_030 Hb_001080_150 Hb_001080_150 Hb_001195_370--Hb_001080_150 Hb_003783_050--Hb_000941_120 Hb_036388_010 Hb_036388_010 Hb_003783_050--Hb_036388_010 Hb_001916_150 Hb_001916_150 Hb_003783_050--Hb_001916_150 Hb_035834_010 Hb_035834_010 Hb_003783_050--Hb_035834_010 Hb_000445_370 Hb_000445_370 Hb_003783_050--Hb_000445_370 Hb_000032_600 Hb_000032_600 Hb_001054_060--Hb_000032_600 Hb_187959_010 Hb_187959_010 Hb_001054_060--Hb_187959_010 Hb_067664_010 Hb_067664_010 Hb_001054_060--Hb_067664_010 Hb_000977_150 Hb_000977_150 Hb_001054_060--Hb_000977_150 Hb_001054_060--Hb_000997_320 Hb_000283_140 Hb_000283_140 Hb_000941_120--Hb_000283_140 Hb_004326_010 Hb_004326_010 Hb_000941_120--Hb_004326_010 Hb_004943_040 Hb_004943_040 Hb_000941_120--Hb_004943_040 Hb_000157_140 Hb_000157_140 Hb_000941_120--Hb_000157_140 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_003006_080--Hb_002805_090 Hb_000473_120 Hb_000473_120 Hb_003006_080--Hb_000473_120 Hb_019654_110 Hb_019654_110 Hb_003006_080--Hb_019654_110 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020 Hb_002311_130 Hb_002311_130 Hb_002805_090--Hb_002311_130 Hb_002805_090--Hb_005116_140 Hb_000066_040 Hb_000066_040 Hb_002805_090--Hb_000066_040 Hb_001998_220 Hb_001998_220 Hb_002805_090--Hb_001998_220 Hb_000025_500 Hb_000025_500 Hb_002805_090--Hb_000025_500 Hb_011174_080 Hb_011174_080 Hb_002805_090--Hb_011174_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.346688 4.03821 3.8841 9.13033 0.616624 1.27403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997333 1.00885 1.14058 5.2653 11.8569

CAGE analysis