Hb_030312_040

Information

Type -
Description -
Location Contig30312: 22503-25923
Sequence    

Annotation

kegg
ID rcu:RCOM_0774230
description Armadillo repeat-containing protein, putative
nr
ID KDP38233.1
description hypothetical protein JCGZ_04876 [Jatropha curcas]
swissprot
ID Q7SZN2
description E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1
trembl
ID A0A067KTH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04876 PE=4 SV=1
Gene Ontology
ID GO:0005622
description e3 ubiquitin-protein ligase rnf170-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31983: 22468-25837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030312_040 0.0 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
2 Hb_006452_030 0.0808728703 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_000703_080 0.0824047961 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
4 Hb_002263_010 0.0824586394 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
5 Hb_003494_240 0.0826135474 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
6 Hb_000608_120 0.0853552822 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
7 Hb_008725_250 0.0884323291 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_001818_080 0.0897285813 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
9 Hb_001811_150 0.0907115918 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
10 Hb_001369_060 0.0910812009 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
11 Hb_015941_030 0.0924955176 - - unknown [Populus trichocarpa]
12 Hb_033491_010 0.0941017124 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
13 Hb_000300_280 0.0948139337 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
14 Hb_004221_010 0.0960610177 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
15 Hb_001454_060 0.0980719623 - - uncharacterized protein LOC100527252 [Glycine max]
16 Hb_002215_050 0.0983167045 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_015026_120 0.0984778004 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
18 Hb_003638_140 0.0989254938 - - protein binding protein, putative [Ricinus communis]
19 Hb_000236_370 0.0989848368 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
20 Hb_003777_270 0.0992650424 - - 60S ribosomal protein L3B [Hevea brasiliensis]

Gene co-expression network

sample Hb_030312_040 Hb_030312_040 Hb_006452_030 Hb_006452_030 Hb_030312_040--Hb_006452_030 Hb_000703_080 Hb_000703_080 Hb_030312_040--Hb_000703_080 Hb_002263_010 Hb_002263_010 Hb_030312_040--Hb_002263_010 Hb_003494_240 Hb_003494_240 Hb_030312_040--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250 Hb_006452_030--Hb_002263_010 Hb_004221_010 Hb_004221_010 Hb_006452_030--Hb_004221_010 Hb_006452_030--Hb_003494_240 Hb_005324_010 Hb_005324_010 Hb_006452_030--Hb_005324_010 Hb_001047_020 Hb_001047_020 Hb_006452_030--Hb_001047_020 Hb_000284_210 Hb_000284_210 Hb_000703_080--Hb_000284_210 Hb_002097_090 Hb_002097_090 Hb_000703_080--Hb_002097_090 Hb_004934_090 Hb_004934_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_001454_060 Hb_001454_060 Hb_000703_080--Hb_001454_060 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060 Hb_003086_020 Hb_003086_020 Hb_002263_010--Hb_003086_020 Hb_004242_100 Hb_004242_100 Hb_002263_010--Hb_004242_100 Hb_000152_140 Hb_000152_140 Hb_002263_010--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002263_010--Hb_001454_140 Hb_003494_240--Hb_001454_060 Hb_003494_240--Hb_000608_120 Hb_000703_090 Hb_000703_090 Hb_003494_240--Hb_000703_090 Hb_002215_050 Hb_002215_050 Hb_003494_240--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_000608_120--Hb_001454_060 Hb_003581_140 Hb_003581_140 Hb_000608_120--Hb_003581_140 Hb_000608_120--Hb_002215_050 Hb_000608_120--Hb_003638_140 Hb_000608_120--Hb_000703_080 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.628 85.0328 17.767 23.6985 122.579 215.148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
160.677 96.7577 92.9001 54.4841 13.7798

CAGE analysis