Hb_030370_010

Information

Type -
Description -
Location Contig30370: 11437-14410
Sequence    

Annotation

kegg
ID bvg:104896222
description uncharacterized LOC104896222
nr
ID XP_010681242.1
description PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030370_010 0.0 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
2 Hb_002123_030 0.0763165716 - - hypothetical protein VITISV_003767 [Vitis vinifera]
3 Hb_001799_220 0.0838679184 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
4 Hb_012253_020 0.1101730446 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000599_070 0.1112686596 - - PREDICTED: patellin-4-like [Jatropha curcas]
6 Hb_009042_010 0.1121895892 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_188450_010 0.1123351959 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_153665_010 0.1176809231 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
9 Hb_005405_010 0.1327368069 - - -
10 Hb_004762_020 0.1373882126 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_123951_010 0.1952257942 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
12 Hb_000418_160 0.226949172 - - -
13 Hb_000832_350 0.2353425218 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_022599_010 0.249160996 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
15 Hb_002025_090 0.2534552245 - - unnamed protein product [Coffea canephora]
16 Hb_014988_030 0.2601450157 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_002090_010 0.2619062513 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
18 Hb_133191_010 0.2657843857 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
19 Hb_000811_090 0.2688151232 - - hypothetical protein VITISV_043745 [Vitis vinifera]
20 Hb_006237_030 0.2719491531 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_030370_010 Hb_030370_010 Hb_002123_030 Hb_002123_030 Hb_030370_010--Hb_002123_030 Hb_001799_220 Hb_001799_220 Hb_030370_010--Hb_001799_220 Hb_012253_020 Hb_012253_020 Hb_030370_010--Hb_012253_020 Hb_000599_070 Hb_000599_070 Hb_030370_010--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_030370_010--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_030370_010--Hb_188450_010 Hb_002123_030--Hb_012253_020 Hb_002123_030--Hb_001799_220 Hb_153665_010 Hb_153665_010 Hb_002123_030--Hb_153665_010 Hb_002123_030--Hb_000599_070 Hb_002123_030--Hb_009042_010 Hb_001799_220--Hb_012253_020 Hb_005405_010 Hb_005405_010 Hb_001799_220--Hb_005405_010 Hb_000832_350 Hb_000832_350 Hb_001799_220--Hb_000832_350 Hb_001799_220--Hb_000599_070 Hb_012253_020--Hb_153665_010 Hb_012253_020--Hb_000599_070 Hb_012253_020--Hb_009042_010 Hb_012253_020--Hb_188450_010 Hb_000599_070--Hb_009042_010 Hb_000599_070--Hb_188450_010 Hb_000599_070--Hb_153665_010 Hb_123951_010 Hb_123951_010 Hb_000599_070--Hb_123951_010 Hb_004762_020 Hb_004762_020 Hb_000599_070--Hb_004762_020 Hb_009042_010--Hb_188450_010 Hb_009042_010--Hb_153665_010 Hb_009042_010--Hb_123951_010 Hb_009042_010--Hb_004762_020 Hb_009042_010--Hb_005405_010 Hb_188450_010--Hb_153665_010 Hb_188450_010--Hb_123951_010 Hb_188450_010--Hb_004762_020 Hb_188450_010--Hb_005405_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00830139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0124146 0.0331134

CAGE analysis