Hb_030370_030

Information

Type -
Description -
Location Contig30370: 31409-36088
Sequence    

Annotation

kegg
ID pop:POPTR_1464s00200g
description putative wall-associated kinase family protein
nr
ID XP_006387229.1
description putative wall-associated kinase family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DX67
description Putative wall-associated kinase family protein OS=Populus trichocarpa GN=POPTR_1464s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030370_030 0.0 - - putative wall-associated kinase family protein [Populus trichocarpa]
2 Hb_010589_110 0.1841139332 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
3 Hb_160837_010 0.1901032036 - - -
4 Hb_000544_110 0.2135204958 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
5 Hb_000803_050 0.214894505 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
6 Hb_001102_250 0.2216999633 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
7 Hb_005908_040 0.2271893154 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
8 Hb_011671_400 0.2283079604 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
9 Hb_001799_040 0.2299695297 - - -
10 Hb_005137_020 0.2334450955 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
11 Hb_001373_100 0.2340586315 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000077_410 0.2348031211 - - protein with unknown function [Ricinus communis]
13 Hb_078633_010 0.2358938515 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
14 Hb_000954_020 0.2368064485 - - -
15 Hb_001279_130 0.2393298661 - - hypothetical protein L484_017676 [Morus notabilis]
16 Hb_002260_090 0.2399890889 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
17 Hb_124567_020 0.2419461602 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
18 Hb_089100_020 0.2437232983 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
19 Hb_000032_350 0.2445341151 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000714_010 0.2457778816 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]

Gene co-expression network

sample Hb_030370_030 Hb_030370_030 Hb_010589_110 Hb_010589_110 Hb_030370_030--Hb_010589_110 Hb_160837_010 Hb_160837_010 Hb_030370_030--Hb_160837_010 Hb_000544_110 Hb_000544_110 Hb_030370_030--Hb_000544_110 Hb_000803_050 Hb_000803_050 Hb_030370_030--Hb_000803_050 Hb_001102_250 Hb_001102_250 Hb_030370_030--Hb_001102_250 Hb_005908_040 Hb_005908_040 Hb_030370_030--Hb_005908_040 Hb_000029_270 Hb_000029_270 Hb_010589_110--Hb_000029_270 Hb_000077_410 Hb_000077_410 Hb_010589_110--Hb_000077_410 Hb_000699_120 Hb_000699_120 Hb_010589_110--Hb_000699_120 Hb_002260_090 Hb_002260_090 Hb_010589_110--Hb_002260_090 Hb_001892_120 Hb_001892_120 Hb_010589_110--Hb_001892_120 Hb_000635_010 Hb_000635_010 Hb_160837_010--Hb_000635_010 Hb_178968_160 Hb_178968_160 Hb_160837_010--Hb_178968_160 Hb_003043_120 Hb_003043_120 Hb_160837_010--Hb_003043_120 Hb_000144_110 Hb_000144_110 Hb_160837_010--Hb_000144_110 Hb_002007_050 Hb_002007_050 Hb_160837_010--Hb_002007_050 Hb_005137_020 Hb_005137_020 Hb_000544_110--Hb_005137_020 Hb_072912_020 Hb_072912_020 Hb_000544_110--Hb_072912_020 Hb_000544_110--Hb_001102_250 Hb_078633_010 Hb_078633_010 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_000544_110--Hb_005908_040 Hb_026428_010 Hb_026428_010 Hb_000803_050--Hb_026428_010 Hb_000235_010 Hb_000235_010 Hb_000803_050--Hb_000235_010 Hb_003050_070 Hb_003050_070 Hb_000803_050--Hb_003050_070 Hb_011004_010 Hb_011004_010 Hb_000803_050--Hb_011004_010 Hb_001671_060 Hb_001671_060 Hb_000803_050--Hb_001671_060 Hb_000575_020 Hb_000575_020 Hb_000803_050--Hb_000575_020 Hb_001102_250--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_001102_250--Hb_005137_020 Hb_004297_040 Hb_004297_040 Hb_001102_250--Hb_004297_040 Hb_005908_040--Hb_005137_020 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_005908_040--Hb_001102_250 Hb_005908_040--Hb_004297_040 Hb_005908_040--Hb_003095_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0445596 0 0.00827408 0 0 0.0108535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0506737 0.0797397 0.0376906 0.00793936 0

CAGE analysis