Hb_030414_050

Information

Type -
Description -
Location Contig30414: 113498-115055
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030414_050 0.0 - - -
2 Hb_060437_010 0.1348298457 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
3 Hb_003050_090 0.1483227513 - - lupus la ribonucleoprotein, putative [Ricinus communis]
4 Hb_000692_170 0.149176204 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
5 Hb_002192_070 0.1508374819 - - -
6 Hb_007416_200 0.1525627062 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
7 Hb_000093_130 0.1528642941 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_002609_100 0.1576243425 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
9 Hb_000140_150 0.1589277736 - - -
10 Hb_000926_270 0.1617545498 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
11 Hb_003813_200 0.1619564138 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_000684_300 0.1653816647 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
13 Hb_183510_010 0.1657538971 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
14 Hb_000849_150 0.1657547408 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
15 Hb_001473_190 0.1663422158 - - 50S ribosomal protein L20 [Hevea brasiliensis]
16 Hb_000836_050 0.1663600683 - - -
17 Hb_001178_060 0.166685356 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
18 Hb_002897_040 0.1691975177 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
19 Hb_000613_020 0.1708384794 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
20 Hb_004032_460 0.1709619393 - - -

Gene co-expression network

sample Hb_030414_050 Hb_030414_050 Hb_060437_010 Hb_060437_010 Hb_030414_050--Hb_060437_010 Hb_003050_090 Hb_003050_090 Hb_030414_050--Hb_003050_090 Hb_000692_170 Hb_000692_170 Hb_030414_050--Hb_000692_170 Hb_002192_070 Hb_002192_070 Hb_030414_050--Hb_002192_070 Hb_007416_200 Hb_007416_200 Hb_030414_050--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_030414_050--Hb_000093_130 Hb_001034_020 Hb_001034_020 Hb_060437_010--Hb_001034_020 Hb_060437_010--Hb_003050_090 Hb_012760_200 Hb_012760_200 Hb_060437_010--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_060437_010--Hb_001178_060 Hb_000025_750 Hb_000025_750 Hb_060437_010--Hb_000025_750 Hb_000640_210 Hb_000640_210 Hb_060437_010--Hb_000640_210 Hb_001140_080 Hb_001140_080 Hb_003050_090--Hb_001140_080 Hb_003050_090--Hb_001034_020 Hb_003050_090--Hb_001178_060 Hb_000953_140 Hb_000953_140 Hb_003050_090--Hb_000953_140 Hb_001259_030 Hb_001259_030 Hb_003050_090--Hb_001259_030 Hb_000692_170--Hb_000025_750 Hb_000692_170--Hb_060437_010 Hb_005725_070 Hb_005725_070 Hb_000692_170--Hb_005725_070 Hb_001227_110 Hb_001227_110 Hb_000692_170--Hb_001227_110 Hb_000692_170--Hb_000093_130 Hb_002728_020 Hb_002728_020 Hb_000692_170--Hb_002728_020 Hb_000849_150 Hb_000849_150 Hb_002192_070--Hb_000849_150 Hb_003813_200 Hb_003813_200 Hb_002192_070--Hb_003813_200 Hb_000544_040 Hb_000544_040 Hb_002192_070--Hb_000544_040 Hb_000815_100 Hb_000815_100 Hb_002192_070--Hb_000815_100 Hb_002192_070--Hb_000025_750 Hb_002897_040 Hb_002897_040 Hb_002192_070--Hb_002897_040 Hb_007416_200--Hb_003813_200 Hb_007416_200--Hb_000093_130 Hb_000684_300 Hb_000684_300 Hb_007416_200--Hb_000684_300 Hb_005333_020 Hb_005333_020 Hb_007416_200--Hb_005333_020 Hb_001956_050 Hb_001956_050 Hb_007416_200--Hb_001956_050 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090 Hb_000093_130--Hb_001227_110 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000093_130--Hb_000025_750 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4417 6.65752 1.60235 0.169869 16.6171 8.17272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34048 3.10265 4.45137 1.04411 0

CAGE analysis