Hb_030429_010

Information

Type -
Description -
Location Contig30429: 437-1067
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44580g
description hypothetical protein
nr
ID XP_006370654.1
description hypothetical protein POPTR_0001s44580g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GUH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44580g PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein POPTR_0001s44580g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030429_010 0.0 - - hypothetical protein POPTR_0001s44580g [Populus trichocarpa]
2 Hb_000414_070 0.1710221395 - - -
3 Hb_001999_150 0.1746452647 - - 60S acidic ribosomal protein P0, putative [Ricinus communis]
4 Hb_000085_250 0.1932357291 - - sodium/hydrogen exchanger, putative [Ricinus communis]
5 Hb_004787_090 0.1964442264 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
6 Hb_000205_110 0.1988036737 - - PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X2 [Populus euphratica]
7 Hb_002214_050 0.2024908636 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
8 Hb_002447_030 0.2028794119 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
9 Hb_023226_090 0.2043666664 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
10 Hb_003086_100 0.2064965666 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
11 Hb_000787_140 0.2078486306 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
12 Hb_024650_020 0.2087394998 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
13 Hb_000362_210 0.2090137847 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
14 Hb_046157_020 0.2093061546 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
15 Hb_010344_040 0.2093805945 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
16 Hb_000479_180 0.2114997274 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001584_300 0.2121163084 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
18 Hb_116264_010 0.21263086 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
19 Hb_002282_020 0.2126311426 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
20 Hb_001008_010 0.2133151433 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_030429_010 Hb_030429_010 Hb_000414_070 Hb_000414_070 Hb_030429_010--Hb_000414_070 Hb_001999_150 Hb_001999_150 Hb_030429_010--Hb_001999_150 Hb_000085_250 Hb_000085_250 Hb_030429_010--Hb_000085_250 Hb_004787_090 Hb_004787_090 Hb_030429_010--Hb_004787_090 Hb_000205_110 Hb_000205_110 Hb_030429_010--Hb_000205_110 Hb_002214_050 Hb_002214_050 Hb_030429_010--Hb_002214_050 Hb_000787_140 Hb_000787_140 Hb_000414_070--Hb_000787_140 Hb_002078_050 Hb_002078_050 Hb_000414_070--Hb_002078_050 Hb_004453_150 Hb_004453_150 Hb_000414_070--Hb_004453_150 Hb_001718_100 Hb_001718_100 Hb_000414_070--Hb_001718_100 Hb_071736_020 Hb_071736_020 Hb_000414_070--Hb_071736_020 Hb_001437_230 Hb_001437_230 Hb_000414_070--Hb_001437_230 Hb_001999_150--Hb_000414_070 Hb_005862_030 Hb_005862_030 Hb_001999_150--Hb_005862_030 Hb_002539_080 Hb_002539_080 Hb_001999_150--Hb_002539_080 Hb_002735_060 Hb_002735_060 Hb_001999_150--Hb_002735_060 Hb_002681_110 Hb_002681_110 Hb_001999_150--Hb_002681_110 Hb_001584_300 Hb_001584_300 Hb_000085_250--Hb_001584_300 Hb_002660_160 Hb_002660_160 Hb_000085_250--Hb_002660_160 Hb_002282_020 Hb_002282_020 Hb_000085_250--Hb_002282_020 Hb_002387_060 Hb_002387_060 Hb_000085_250--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_000085_250--Hb_000032_220 Hb_010172_030 Hb_010172_030 Hb_000085_250--Hb_010172_030 Hb_048141_010 Hb_048141_010 Hb_004787_090--Hb_048141_010 Hb_004659_120 Hb_004659_120 Hb_004787_090--Hb_004659_120 Hb_006501_110 Hb_006501_110 Hb_004787_090--Hb_006501_110 Hb_008847_010 Hb_008847_010 Hb_004787_090--Hb_008847_010 Hb_023226_090 Hb_023226_090 Hb_004787_090--Hb_023226_090 Hb_005271_170 Hb_005271_170 Hb_004787_090--Hb_005271_170 Hb_000205_110--Hb_000414_070 Hb_000205_110--Hb_000787_140 Hb_000199_070 Hb_000199_070 Hb_000205_110--Hb_000199_070 Hb_098315_120 Hb_098315_120 Hb_000205_110--Hb_098315_120 Hb_093666_020 Hb_093666_020 Hb_000205_110--Hb_093666_020 Hb_014324_030 Hb_014324_030 Hb_000205_110--Hb_014324_030 Hb_002214_050--Hb_010172_030 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_004994_260 Hb_004994_260 Hb_002214_050--Hb_004994_260 Hb_000333_090 Hb_000333_090 Hb_002214_050--Hb_000333_090 Hb_000362_210 Hb_000362_210 Hb_002214_050--Hb_000362_210 Hb_000907_090 Hb_000907_090 Hb_002214_050--Hb_000907_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517315 0 0.0792697 0.0551306 0.100759 0.175506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.362156 0.189702 0.162746 0.0392094 0

CAGE analysis