Hb_030458_010

Information

Type -
Description -
Location Contig30458: 3833-6295
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030458_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_004826_020 0.2254880248 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000260_310 0.2346307675 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
4 Hb_003052_040 0.2607420977 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007429_030 0.2653901207 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
6 Hb_004048_060 0.2681667549 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
7 Hb_025214_130 0.2703550081 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
8 Hb_001396_190 0.2709476572 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
9 Hb_001369_450 0.2720726002 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_002045_180 0.2746468423 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
11 Hb_001514_230 0.2756055993 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
12 Hb_009974_030 0.2761816338 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
13 Hb_001364_030 0.2765306752 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
14 Hb_014497_110 0.2779991679 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
15 Hb_006573_180 0.2803913667 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
16 Hb_007305_030 0.2835012217 - - serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_004048_050 0.2835929773 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
18 Hb_003504_020 0.2862880506 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
19 Hb_017434_050 0.2863596964 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
20 Hb_006198_180 0.2864168213 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_030458_010 Hb_030458_010 Hb_004826_020 Hb_004826_020 Hb_030458_010--Hb_004826_020 Hb_000260_310 Hb_000260_310 Hb_030458_010--Hb_000260_310 Hb_003052_040 Hb_003052_040 Hb_030458_010--Hb_003052_040 Hb_007429_030 Hb_007429_030 Hb_030458_010--Hb_007429_030 Hb_004048_060 Hb_004048_060 Hb_030458_010--Hb_004048_060 Hb_025214_130 Hb_025214_130 Hb_030458_010--Hb_025214_130 Hb_001364_030 Hb_001364_030 Hb_004826_020--Hb_001364_030 Hb_004826_020--Hb_004048_060 Hb_012366_020 Hb_012366_020 Hb_004826_020--Hb_012366_020 Hb_085659_010 Hb_085659_010 Hb_004826_020--Hb_085659_010 Hb_000941_070 Hb_000941_070 Hb_004826_020--Hb_000941_070 Hb_000264_020 Hb_000264_020 Hb_000260_310--Hb_000264_020 Hb_003504_020 Hb_003504_020 Hb_000260_310--Hb_003504_020 Hb_019654_090 Hb_019654_090 Hb_000260_310--Hb_019654_090 Hb_002053_060 Hb_002053_060 Hb_000260_310--Hb_002053_060 Hb_000373_180 Hb_000373_180 Hb_000260_310--Hb_000373_180 Hb_001514_230 Hb_001514_230 Hb_000260_310--Hb_001514_230 Hb_011671_400 Hb_011671_400 Hb_003052_040--Hb_011671_400 Hb_002260_090 Hb_002260_090 Hb_003052_040--Hb_002260_090 Hb_001396_190 Hb_001396_190 Hb_003052_040--Hb_001396_190 Hb_005914_070 Hb_005914_070 Hb_003052_040--Hb_005914_070 Hb_078633_010 Hb_078633_010 Hb_003052_040--Hb_078633_010 Hb_014497_110 Hb_014497_110 Hb_003052_040--Hb_014497_110 Hb_003943_030 Hb_003943_030 Hb_007429_030--Hb_003943_030 Hb_007429_030--Hb_003504_020 Hb_007429_030--Hb_025214_130 Hb_004414_050 Hb_004414_050 Hb_007429_030--Hb_004414_050 Hb_007429_030--Hb_019654_090 Hb_001959_160 Hb_001959_160 Hb_007429_030--Hb_001959_160 Hb_004048_060--Hb_014497_110 Hb_000392_330 Hb_000392_330 Hb_004048_060--Hb_000392_330 Hb_008516_020 Hb_008516_020 Hb_004048_060--Hb_008516_020 Hb_002983_030 Hb_002983_030 Hb_004048_060--Hb_002983_030 Hb_000723_160 Hb_000723_160 Hb_004048_060--Hb_000723_160 Hb_001005_070 Hb_001005_070 Hb_004048_060--Hb_001005_070 Hb_001153_220 Hb_001153_220 Hb_025214_130--Hb_001153_220 Hb_064997_010 Hb_064997_010 Hb_025214_130--Hb_064997_010 Hb_025214_130--Hb_004414_050 Hb_002794_030 Hb_002794_030 Hb_025214_130--Hb_002794_030 Hb_025214_130--Hb_001959_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167493 0.0165906 0 0.00635098 0 0.00792371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0190142 0.0299235 0.0569624 0 0

CAGE analysis