Hb_030545_020

Information

Type -
Description -
Location Contig30545: 41068-41844
Sequence    

Annotation

kegg
ID rcu:RCOM_1504680
description hypothetical protein
nr
ID XP_002511115.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9RA90
description CASP-like protein 1F1 OS=Ricinus communis GN=RCOM_1504680 PE=2 SV=1
trembl
ID M5WAT9
description CASP-like protein OS=Prunus persica GN=PRUPE_ppa012166mg PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein poptrdraft_823430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32228: 40824-41909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030545_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000445_320 0.0903787191 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
3 Hb_000187_020 0.0973150455 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
4 Hb_008226_050 0.0991412307 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
5 Hb_059832_010 0.1043292319 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
6 Hb_000732_090 0.1076715996 - - cyclin d, putative [Ricinus communis]
7 Hb_005288_090 0.1078186188 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
8 Hb_005918_020 0.1078591431 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
9 Hb_001257_070 0.1170753951 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
10 Hb_002045_160 0.1211465563 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
11 Hb_000130_400 0.1217493523 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
12 Hb_158845_010 0.1225345259 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
13 Hb_001541_140 0.1252598 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
14 Hb_000051_130 0.1265523242 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_002205_220 0.1287520311 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
16 Hb_000010_320 0.1294671875 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
17 Hb_000375_200 0.1294907542 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
18 Hb_015299_040 0.1298245877 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
19 Hb_002453_040 0.1353871376 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
20 Hb_004003_020 0.1356748641 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_030545_020 Hb_030545_020 Hb_000445_320 Hb_000445_320 Hb_030545_020--Hb_000445_320 Hb_000187_020 Hb_000187_020 Hb_030545_020--Hb_000187_020 Hb_008226_050 Hb_008226_050 Hb_030545_020--Hb_008226_050 Hb_059832_010 Hb_059832_010 Hb_030545_020--Hb_059832_010 Hb_000732_090 Hb_000732_090 Hb_030545_020--Hb_000732_090 Hb_005288_090 Hb_005288_090 Hb_030545_020--Hb_005288_090 Hb_000445_320--Hb_000187_020 Hb_002453_040 Hb_002453_040 Hb_000445_320--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000445_320--Hb_052530_010 Hb_000445_320--Hb_059832_010 Hb_000193_170 Hb_000193_170 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020 Hb_000375_200 Hb_000375_200 Hb_000187_020--Hb_000375_200 Hb_000187_020--Hb_059832_010 Hb_000187_020--Hb_000193_170 Hb_000130_400 Hb_000130_400 Hb_000187_020--Hb_000130_400 Hb_000051_130 Hb_000051_130 Hb_000187_020--Hb_000051_130 Hb_000675_130 Hb_000675_130 Hb_008226_050--Hb_000675_130 Hb_003641_040 Hb_003641_040 Hb_008226_050--Hb_003641_040 Hb_002205_220 Hb_002205_220 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_008226_050--Hb_000130_400 Hb_059832_010--Hb_000130_400 Hb_000010_320 Hb_000010_320 Hb_059832_010--Hb_000010_320 Hb_059832_010--Hb_000375_200 Hb_158845_010 Hb_158845_010 Hb_059832_010--Hb_158845_010 Hb_000732_090--Hb_002205_220 Hb_000732_090--Hb_000675_130 Hb_000732_090--Hb_008226_050 Hb_000732_090--Hb_000187_020 Hb_000394_120 Hb_000394_120 Hb_000732_090--Hb_000394_120 Hb_000732_090--Hb_000130_400 Hb_012395_040 Hb_012395_040 Hb_005288_090--Hb_012395_040 Hb_000340_550 Hb_000340_550 Hb_005288_090--Hb_000340_550 Hb_005288_090--Hb_001257_070 Hb_000060_030 Hb_000060_030 Hb_005288_090--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_005288_090--Hb_005618_070 Hb_000116_050 Hb_000116_050 Hb_005288_090--Hb_000116_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0852798 9.13884 3.00204 0.144389 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116577 0 0 0.113406 1.04625

CAGE analysis