Hb_030545_040

Information

Type -
Description -
Location Contig30545: 55467-59124
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030545_040 0.0 - - -
2 Hb_075351_010 0.1202500738 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
3 Hb_000521_310 0.3001325211 - - -
4 Hb_022593_030 0.3092844126 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_001673_110 0.3125920296 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
6 Hb_009730_010 0.3225819625 - - -
7 Hb_018616_030 0.3277287086 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
8 Hb_012052_030 0.3342018817 - - -
9 Hb_004102_050 0.3360659763 - - JHL25H03.10 [Jatropha curcas]
10 Hb_000261_270 0.3389758728 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
11 Hb_021650_050 0.3391461356 - - hypothetical protein RCOM_0852210 [Ricinus communis]
12 Hb_002235_090 0.3414471315 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_001140_340 0.3473947434 - - -
14 Hb_003947_010 0.3494200582 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
15 Hb_002097_020 0.3521495127 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
16 Hb_010423_010 0.3576124023 - - -
17 Hb_029475_010 0.3722797977 - - conserved hypothetical protein [Ricinus communis]
18 Hb_096473_010 0.3725619987 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_001146_090 0.3738511267 - - valacyclovir hydrolase, putative [Ricinus communis]
20 Hb_006054_020 0.3741862188 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_030545_040 Hb_030545_040 Hb_075351_010 Hb_075351_010 Hb_030545_040--Hb_075351_010 Hb_000521_310 Hb_000521_310 Hb_030545_040--Hb_000521_310 Hb_022593_030 Hb_022593_030 Hb_030545_040--Hb_022593_030 Hb_001673_110 Hb_001673_110 Hb_030545_040--Hb_001673_110 Hb_009730_010 Hb_009730_010 Hb_030545_040--Hb_009730_010 Hb_018616_030 Hb_018616_030 Hb_030545_040--Hb_018616_030 Hb_021650_050 Hb_021650_050 Hb_075351_010--Hb_021650_050 Hb_012052_030 Hb_012052_030 Hb_075351_010--Hb_012052_030 Hb_075351_010--Hb_022593_030 Hb_075351_010--Hb_001673_110 Hb_075351_010--Hb_000521_310 Hb_005147_050 Hb_005147_050 Hb_000521_310--Hb_005147_050 Hb_001140_340 Hb_001140_340 Hb_000521_310--Hb_001140_340 Hb_009913_010 Hb_009913_010 Hb_000521_310--Hb_009913_010 Hb_029475_010 Hb_029475_010 Hb_000521_310--Hb_029475_010 Hb_000521_310--Hb_022593_030 Hb_000521_310--Hb_018616_030 Hb_001369_560 Hb_001369_560 Hb_022593_030--Hb_001369_560 Hb_010423_010 Hb_010423_010 Hb_022593_030--Hb_010423_010 Hb_003442_010 Hb_003442_010 Hb_022593_030--Hb_003442_010 Hb_022593_030--Hb_009913_010 Hb_007441_060 Hb_007441_060 Hb_022593_030--Hb_007441_060 Hb_022593_030--Hb_005147_050 Hb_000035_300 Hb_000035_300 Hb_001673_110--Hb_000035_300 Hb_000878_150 Hb_000878_150 Hb_001673_110--Hb_000878_150 Hb_003752_130 Hb_003752_130 Hb_001673_110--Hb_003752_130 Hb_012702_020 Hb_012702_020 Hb_001673_110--Hb_012702_020 Hb_000291_020 Hb_000291_020 Hb_001673_110--Hb_000291_020 Hb_015912_010 Hb_015912_010 Hb_001673_110--Hb_015912_010 Hb_002235_090 Hb_002235_090 Hb_009730_010--Hb_002235_090 Hb_000261_270 Hb_000261_270 Hb_009730_010--Hb_000261_270 Hb_000858_040 Hb_000858_040 Hb_009730_010--Hb_000858_040 Hb_001882_140 Hb_001882_140 Hb_009730_010--Hb_001882_140 Hb_047735_010 Hb_047735_010 Hb_009730_010--Hb_047735_010 Hb_001140_230 Hb_001140_230 Hb_018616_030--Hb_001140_230 Hb_018616_030--Hb_001140_340 Hb_000733_110 Hb_000733_110 Hb_018616_030--Hb_000733_110 Hb_018616_030--Hb_029475_010 Hb_003947_010 Hb_003947_010 Hb_018616_030--Hb_003947_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0285562 0.0190368 0.0180905 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0331065 0

CAGE analysis