Hb_030565_030

Information

Type -
Description -
Location Contig30565: 22143-30856
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08530g
description hypothetical protein
nr
ID XP_012071091.1
description PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32267: 22251-30774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_030 0.0 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
2 Hb_005188_020 0.066921188 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
3 Hb_000836_040 0.0678816884 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_020805_130 0.0799359307 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_000230_500 0.080382593 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
6 Hb_001959_190 0.0831164114 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
7 Hb_009803_050 0.0868541241 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
8 Hb_003371_090 0.0883826019 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
9 Hb_000041_100 0.091673835 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
10 Hb_001318_270 0.0936040418 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
11 Hb_000497_300 0.0949524984 - - peroxisomal membrane protein [Hevea brasiliensis]
12 Hb_004052_090 0.095631669 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
13 Hb_000367_260 0.0972150119 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
14 Hb_005162_070 0.097537184 - - conserved hypothetical protein [Ricinus communis]
15 Hb_013607_040 0.0996103228 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
16 Hb_164010_030 0.1014314864 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
17 Hb_012325_020 0.1015269411 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
18 Hb_002988_040 0.1027671323 - - -
19 Hb_000258_270 0.1029841911 - - PREDICTED: cullin-3A [Jatropha curcas]
20 Hb_002311_360 0.1032195616 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]

Gene co-expression network

sample Hb_030565_030 Hb_030565_030 Hb_005188_020 Hb_005188_020 Hb_030565_030--Hb_005188_020 Hb_000836_040 Hb_000836_040 Hb_030565_030--Hb_000836_040 Hb_020805_130 Hb_020805_130 Hb_030565_030--Hb_020805_130 Hb_000230_500 Hb_000230_500 Hb_030565_030--Hb_000230_500 Hb_001959_190 Hb_001959_190 Hb_030565_030--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_030565_030--Hb_009803_050 Hb_005188_020--Hb_000230_500 Hb_000041_100 Hb_000041_100 Hb_005188_020--Hb_000041_100 Hb_004374_070 Hb_004374_070 Hb_005188_020--Hb_004374_070 Hb_001318_270 Hb_001318_270 Hb_005188_020--Hb_001318_270 Hb_003371_090 Hb_003371_090 Hb_005188_020--Hb_003371_090 Hb_000258_270 Hb_000258_270 Hb_000836_040--Hb_000258_270 Hb_004724_080 Hb_004724_080 Hb_000836_040--Hb_004724_080 Hb_000003_250 Hb_000003_250 Hb_000836_040--Hb_000003_250 Hb_004052_090 Hb_004052_090 Hb_000836_040--Hb_004052_090 Hb_000047_030 Hb_000047_030 Hb_000836_040--Hb_000047_030 Hb_020805_130--Hb_001959_190 Hb_001507_040 Hb_001507_040 Hb_020805_130--Hb_001507_040 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_000230_500--Hb_000041_100 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_004607_030 Hb_004607_030 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_001959_190--Hb_003371_090 Hb_001959_190--Hb_009803_050 Hb_001959_190--Hb_001507_040 Hb_009803_050--Hb_000603_080 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10367 10.9689 6.01897 8.50662 6.27288 8.05173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.241 12.8124 25.2365 6.94687 13.3628

CAGE analysis