Hb_030565_070

Information

Type -
Description -
Location Contig30565: 49913-51009
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_070 0.0 - - -
2 Hb_000163_200 0.123262314 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
3 Hb_010710_020 0.1239224667 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
4 Hb_000107_370 0.1239419587 - - PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
5 Hb_001153_080 0.128354888 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
6 Hb_001722_040 0.131313372 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_005618_040 0.1399016995 - - -
8 Hb_001454_330 0.1405616041 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
9 Hb_001623_240 0.1407763983 - - hypothetical protein VITISV_004933 [Vitis vinifera]
10 Hb_001341_130 0.1422370557 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002529_100 0.1438946229 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
12 Hb_000634_050 0.1471081901 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
13 Hb_003751_120 0.147741015 - - -
14 Hb_000261_460 0.1490126993 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
15 Hb_001999_120 0.1494440238 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
16 Hb_001035_030 0.1497665275 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
17 Hb_001951_110 0.1498947724 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
18 Hb_000025_290 0.1500545262 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
19 Hb_000563_590 0.1507846309 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
20 Hb_003226_150 0.1512407056 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]

Gene co-expression network

sample Hb_030565_070 Hb_030565_070 Hb_000163_200 Hb_000163_200 Hb_030565_070--Hb_000163_200 Hb_010710_020 Hb_010710_020 Hb_030565_070--Hb_010710_020 Hb_000107_370 Hb_000107_370 Hb_030565_070--Hb_000107_370 Hb_001153_080 Hb_001153_080 Hb_030565_070--Hb_001153_080 Hb_001722_040 Hb_001722_040 Hb_030565_070--Hb_001722_040 Hb_005618_040 Hb_005618_040 Hb_030565_070--Hb_005618_040 Hb_004242_080 Hb_004242_080 Hb_000163_200--Hb_004242_080 Hb_004607_140 Hb_004607_140 Hb_000163_200--Hb_004607_140 Hb_001951_110 Hb_001951_110 Hb_000163_200--Hb_001951_110 Hb_157854_010 Hb_157854_010 Hb_000163_200--Hb_157854_010 Hb_000417_110 Hb_000417_110 Hb_000163_200--Hb_000417_110 Hb_000479_180 Hb_000479_180 Hb_000163_200--Hb_000479_180 Hb_001538_100 Hb_001538_100 Hb_010710_020--Hb_001538_100 Hb_003680_070 Hb_003680_070 Hb_010710_020--Hb_003680_070 Hb_010710_020--Hb_001153_080 Hb_010710_020--Hb_000163_200 Hb_000261_460 Hb_000261_460 Hb_010710_020--Hb_000261_460 Hb_000107_370--Hb_000163_200 Hb_003751_120 Hb_003751_120 Hb_000107_370--Hb_003751_120 Hb_054301_010 Hb_054301_010 Hb_000107_370--Hb_054301_010 Hb_031403_010 Hb_031403_010 Hb_000107_370--Hb_031403_010 Hb_007409_020 Hb_007409_020 Hb_000107_370--Hb_007409_020 Hb_000045_190 Hb_000045_190 Hb_001153_080--Hb_000045_190 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_001341_130 Hb_001341_130 Hb_001153_080--Hb_001341_130 Hb_000634_050 Hb_000634_050 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_000188_130 Hb_000188_130 Hb_001153_080--Hb_000188_130 Hb_183963_020 Hb_183963_020 Hb_001722_040--Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_001722_040--Hb_025087_010 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180 Hb_005618_040--Hb_000261_460 Hb_007666_020 Hb_007666_020 Hb_005618_040--Hb_007666_020 Hb_005618_040--Hb_025087_010 Hb_001153_200 Hb_001153_200 Hb_005618_040--Hb_001153_200 Hb_000051_040 Hb_000051_040 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97986 0.238795 0.346008 0.0759341 1.3626 1.30486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53421 2.77624 1.16177 0.91884 0

CAGE analysis