Hb_030565_080

Information

Type -
Description -
Location Contig30565: 57094-63873
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08590g
description hypothetical protein
nr
ID XP_012071088.1
description PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
swissprot
ID Q84LH3
description Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1
trembl
ID A0A067L4A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01087 PE=4 SV=1
Gene Ontology
ID GO:0003676
description werner syndrome-like exonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32270: 56941-57157 , PASA_asmbl_32271: 58372-58715 , PASA_asmbl_32272: 58553-62573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_080 0.0 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
2 Hb_000265_240 0.1027522831 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
3 Hb_000771_080 0.1109621254 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
4 Hb_001810_030 0.1162882493 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_000098_190 0.1163854607 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
6 Hb_097783_020 0.1237848345 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
7 Hb_003788_050 0.1244383615 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
8 Hb_001564_130 0.1251166531 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_010368_020 0.131395787 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
10 Hb_003025_020 0.1333379146 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000377_070 0.1359641236 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [Jatropha curcas]
12 Hb_003086_070 0.136262114 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
13 Hb_002338_060 0.1370628752 - - 2Fe-2S ferredoxin [Glycine soja]
14 Hb_002154_120 0.1396870051 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
15 Hb_000670_020 0.140497262 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
16 Hb_005618_160 0.1455149562 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
17 Hb_003292_040 0.1459507999 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
18 Hb_009803_040 0.1492709433 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
19 Hb_001329_290 0.1493894139 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
20 Hb_089032_020 0.1497384733 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_030565_080 Hb_030565_080 Hb_000265_240 Hb_000265_240 Hb_030565_080--Hb_000265_240 Hb_000771_080 Hb_000771_080 Hb_030565_080--Hb_000771_080 Hb_001810_030 Hb_001810_030 Hb_030565_080--Hb_001810_030 Hb_000098_190 Hb_000098_190 Hb_030565_080--Hb_000098_190 Hb_097783_020 Hb_097783_020 Hb_030565_080--Hb_097783_020 Hb_003788_050 Hb_003788_050 Hb_030565_080--Hb_003788_050 Hb_001329_290 Hb_001329_290 Hb_000265_240--Hb_001329_290 Hb_001564_130 Hb_001564_130 Hb_000265_240--Hb_001564_130 Hb_004449_170 Hb_004449_170 Hb_000265_240--Hb_004449_170 Hb_000377_070 Hb_000377_070 Hb_000265_240--Hb_000377_070 Hb_003292_040 Hb_003292_040 Hb_000265_240--Hb_003292_040 Hb_010368_020 Hb_010368_020 Hb_000771_080--Hb_010368_020 Hb_000771_080--Hb_097783_020 Hb_001586_040 Hb_001586_040 Hb_000771_080--Hb_001586_040 Hb_000771_080--Hb_001564_130 Hb_005618_160 Hb_005618_160 Hb_000771_080--Hb_005618_160 Hb_000144_100 Hb_000144_100 Hb_000771_080--Hb_000144_100 Hb_001810_030--Hb_000265_240 Hb_002316_130 Hb_002316_130 Hb_001810_030--Hb_002316_130 Hb_001810_030--Hb_001564_130 Hb_030928_040 Hb_030928_040 Hb_001810_030--Hb_030928_040 Hb_001810_030--Hb_003292_040 Hb_002784_040 Hb_002784_040 Hb_000098_190--Hb_002784_040 Hb_002107_130 Hb_002107_130 Hb_000098_190--Hb_002107_130 Hb_000714_030 Hb_000714_030 Hb_000098_190--Hb_000714_030 Hb_008578_010 Hb_008578_010 Hb_000098_190--Hb_008578_010 Hb_006816_150 Hb_006816_150 Hb_000098_190--Hb_006816_150 Hb_000933_050 Hb_000933_050 Hb_000098_190--Hb_000933_050 Hb_011224_060 Hb_011224_060 Hb_097783_020--Hb_011224_060 Hb_097783_020--Hb_005618_160 Hb_097783_020--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_097783_020--Hb_011970_030 Hb_000313_300 Hb_000313_300 Hb_097783_020--Hb_000313_300 Hb_000358_250 Hb_000358_250 Hb_003788_050--Hb_000358_250 Hb_089032_020 Hb_089032_020 Hb_003788_050--Hb_089032_020 Hb_003025_020 Hb_003025_020 Hb_003788_050--Hb_003025_020 Hb_000640_230 Hb_000640_230 Hb_003788_050--Hb_000640_230 Hb_009803_040 Hb_009803_040 Hb_003788_050--Hb_009803_040 Hb_000076_270 Hb_000076_270 Hb_003788_050--Hb_000076_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.861341 0.5989 1.05527 0.76643 3.34529 1.16836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43999 2.30695 0.461947 0.810485 0.513299

CAGE analysis