Hb_030565_090

Information

Type -
Description -
Location Contig30565: 68024-92470
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32760g
description POPTRDRAFT_829809; DNA repair-recombination family protein
nr
ID XP_012071087.1
description PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
swissprot
ID Q9SL02
description DNA repair protein RAD50 OS=Arabidopsis thaliana GN=RAD50 PE=1 SV=2
trembl
ID B9GFJ5
description DNA repair-recombination family protein OS=Populus trichocarpa GN=POPTR_0001s32760g PE=4 SV=1
Gene Ontology
ID GO:0005737
description dna repair protein rad50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32273: 68141-68325 , PASA_asmbl_32274: 69113-73470 , PASA_asmbl_32275: 73474-81585 , PASA_asmbl_32276: 82528-83111 , PASA_asmbl_32277: 88811-92461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_090 0.0 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
2 Hb_000997_030 0.0576529347 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_000363_130 0.0703639618 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
4 Hb_000264_100 0.0705719314 - - conserved hypothetical protein [Ricinus communis]
5 Hb_034243_020 0.0720259038 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
6 Hb_033883_060 0.0720345251 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
7 Hb_031042_070 0.0743449137 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000813_100 0.0764363866 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
9 Hb_007576_120 0.07673036 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
10 Hb_001633_040 0.0779293828 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
11 Hb_000107_040 0.0782630598 - - nuclear pore complex protein nup153, putative [Ricinus communis]
12 Hb_002524_040 0.0783406874 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
13 Hb_004543_030 0.0797871253 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
14 Hb_001493_040 0.0805714303 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
15 Hb_074969_010 0.0821167679 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
16 Hb_000120_610 0.0822054151 - - mitotic control protein dis3, putative [Ricinus communis]
17 Hb_000796_190 0.0830562255 - - hypothetical protein F383_31148 [Gossypium arboreum]
18 Hb_029142_010 0.0844241272 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
19 Hb_002163_010 0.0851807377 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
20 Hb_147737_010 0.0859531104 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_030565_090 Hb_030565_090 Hb_000997_030 Hb_000997_030 Hb_030565_090--Hb_000997_030 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_000264_100 Hb_000264_100 Hb_030565_090--Hb_000264_100 Hb_034243_020 Hb_034243_020 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_000997_030--Hb_000264_100 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_000997_030--Hb_034243_020 Hb_001946_300 Hb_001946_300 Hb_000363_130--Hb_001946_300 Hb_140049_020 Hb_140049_020 Hb_000363_130--Hb_140049_020 Hb_000313_340 Hb_000313_340 Hb_000363_130--Hb_000313_340 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090 Hb_000120_610 Hb_000120_610 Hb_000264_100--Hb_000120_610 Hb_000264_100--Hb_140049_020 Hb_000594_020 Hb_000594_020 Hb_000264_100--Hb_000594_020 Hb_004899_070 Hb_004899_070 Hb_000264_100--Hb_004899_070 Hb_004543_030 Hb_004543_030 Hb_034243_020--Hb_004543_030 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_010315_090 Hb_010315_090 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_033883_060--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_033883_060--Hb_001633_040 Hb_004635_050 Hb_004635_050 Hb_033883_060--Hb_004635_050 Hb_017075_030 Hb_017075_030 Hb_033883_060--Hb_017075_030 Hb_004920_130 Hb_004920_130 Hb_033883_060--Hb_004920_130 Hb_002659_060 Hb_002659_060 Hb_033883_060--Hb_002659_060 Hb_031042_070--Hb_001633_040 Hb_007982_070 Hb_007982_070 Hb_031042_070--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_031042_070--Hb_000300_360 Hb_002163_010 Hb_002163_010 Hb_031042_070--Hb_002163_010 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8055 20.1663 5.11666 6.15845 15.2394 19.8583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43882 6.13776 6.43215 11.3075 7.74865

CAGE analysis