Hb_030565_130

Information

Type -
Description -
Location Contig30565: 113161-114666
Sequence    

Annotation

kegg
ID rcu:RCOM_0523490
description RALFL33, putative
nr
ID KDP39326.1
description hypothetical protein JCGZ_01083 [Jatropha curcas]
swissprot
ID Q9LK37
description Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1
trembl
ID A0A067KSY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01083 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32282: 114792-114958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_130 0.0 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
2 Hb_001373_150 0.1243926507 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
3 Hb_006570_070 0.1265933744 - - cyclophilin [Hevea brasiliensis]
4 Hb_000318_100 0.1381161485 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
5 Hb_157022_020 0.142918626 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
6 Hb_000174_070 0.1476542745 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
7 Hb_007140_020 0.1490820024 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
8 Hb_046157_020 0.1535700346 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
9 Hb_000123_170 0.1543550923 - - Rab3 [Hevea brasiliensis]
10 Hb_007002_030 0.156313675 - - PREDICTED: transmembrane protein 205 [Jatropha curcas]
11 Hb_002301_290 0.1563988444 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
12 Hb_000700_130 0.1590537102 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
13 Hb_020400_050 0.1597251487 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
14 Hb_004650_100 0.1597343761 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
15 Hb_008554_020 0.1607688509 - - -
16 Hb_004738_010 0.1609092613 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
17 Hb_004965_070 0.1610524496 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
18 Hb_006501_110 0.1639881082 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
19 Hb_001832_010 0.1654867779 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
20 Hb_003408_020 0.1658729034 - - hypothetical protein RCOM_0453040 [Ricinus communis]

Gene co-expression network

sample Hb_030565_130 Hb_030565_130 Hb_001373_150 Hb_001373_150 Hb_030565_130--Hb_001373_150 Hb_006570_070 Hb_006570_070 Hb_030565_130--Hb_006570_070 Hb_000318_100 Hb_000318_100 Hb_030565_130--Hb_000318_100 Hb_157022_020 Hb_157022_020 Hb_030565_130--Hb_157022_020 Hb_000174_070 Hb_000174_070 Hb_030565_130--Hb_000174_070 Hb_007140_020 Hb_007140_020 Hb_030565_130--Hb_007140_020 Hb_002301_290 Hb_002301_290 Hb_001373_150--Hb_002301_290 Hb_008554_020 Hb_008554_020 Hb_001373_150--Hb_008554_020 Hb_002235_400 Hb_002235_400 Hb_001373_150--Hb_002235_400 Hb_000184_040 Hb_000184_040 Hb_001373_150--Hb_000184_040 Hb_006501_110 Hb_006501_110 Hb_001373_150--Hb_006501_110 Hb_001153_150 Hb_001153_150 Hb_006570_070--Hb_001153_150 Hb_112064_020 Hb_112064_020 Hb_006570_070--Hb_112064_020 Hb_000914_170 Hb_000914_170 Hb_006570_070--Hb_000914_170 Hb_006570_070--Hb_001373_150 Hb_002473_110 Hb_002473_110 Hb_006570_070--Hb_002473_110 Hb_000590_100 Hb_000590_100 Hb_000318_100--Hb_000590_100 Hb_020400_050 Hb_020400_050 Hb_000318_100--Hb_020400_050 Hb_000506_120 Hb_000506_120 Hb_000318_100--Hb_000506_120 Hb_001824_010 Hb_001824_010 Hb_000318_100--Hb_001824_010 Hb_000317_410 Hb_000317_410 Hb_000318_100--Hb_000317_410 Hb_008699_020 Hb_008699_020 Hb_000318_100--Hb_008699_020 Hb_002681_110 Hb_002681_110 Hb_157022_020--Hb_002681_110 Hb_000922_270 Hb_000922_270 Hb_157022_020--Hb_000922_270 Hb_003408_020 Hb_003408_020 Hb_157022_020--Hb_003408_020 Hb_157022_020--Hb_000174_070 Hb_002735_060 Hb_002735_060 Hb_157022_020--Hb_002735_060 Hb_092100_020 Hb_092100_020 Hb_157022_020--Hb_092100_020 Hb_000025_120 Hb_000025_120 Hb_000174_070--Hb_000025_120 Hb_002411_200 Hb_002411_200 Hb_000174_070--Hb_002411_200 Hb_001105_070 Hb_001105_070 Hb_000174_070--Hb_001105_070 Hb_020178_070 Hb_020178_070 Hb_000174_070--Hb_020178_070 Hb_000496_060 Hb_000496_060 Hb_000174_070--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000174_070--Hb_014720_080 Hb_000035_430 Hb_000035_430 Hb_007140_020--Hb_000035_430 Hb_000012_130 Hb_000012_130 Hb_007140_020--Hb_000012_130 Hb_004738_010 Hb_004738_010 Hb_007140_020--Hb_004738_010 Hb_000188_130 Hb_000188_130 Hb_007140_020--Hb_000188_130 Hb_001687_040 Hb_001687_040 Hb_007140_020--Hb_001687_040 Hb_001135_080 Hb_001135_080 Hb_007140_020--Hb_001135_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.2998 6.15349 12.21 42.8239 24.6527 28.2537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.884 52.2732 53.7591 43.8172 10.3805

CAGE analysis