Hb_030602_030

Information

Type -
Description -
Location Contig30602: 5686-10337
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030602_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_007627_020 4.60104e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_005673_010 0.0001313283 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_068533_010 0.0007686185 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_004458_020 0.0008520197 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
6 Hb_005211_200 0.0009639632 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
7 Hb_007187_020 0.0011165396 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
8 Hb_000696_280 0.0013758063 - - protein phosphatase-2c, putative [Ricinus communis]
9 Hb_005181_100 0.002431941 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
10 Hb_000000_350 0.0028384383 - - -
11 Hb_000107_010 0.0028890776 - - -
12 Hb_037949_010 0.0033208382 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
13 Hb_000984_090 0.0034892049 - - -
14 Hb_002400_130 0.0040170521 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
15 Hb_005144_200 0.0046782841 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
16 Hb_113631_010 0.0051547834 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000029_250 0.0056699675 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000352_250 0.0060882531 - - -
19 Hb_013204_010 0.0064225808 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
20 Hb_187024_010 0.0100639093 - - -

Gene co-expression network

sample Hb_030602_030 Hb_030602_030 Hb_007627_020 Hb_007627_020 Hb_030602_030--Hb_007627_020 Hb_005673_010 Hb_005673_010 Hb_030602_030--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_030602_030--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_030602_030--Hb_004458_020 Hb_005211_200 Hb_005211_200 Hb_030602_030--Hb_005211_200 Hb_007187_020 Hb_007187_020 Hb_030602_030--Hb_007187_020 Hb_007627_020--Hb_005673_010 Hb_007627_020--Hb_068533_010 Hb_007627_020--Hb_004458_020 Hb_007627_020--Hb_005211_200 Hb_007627_020--Hb_007187_020 Hb_005673_010--Hb_068533_010 Hb_005673_010--Hb_004458_020 Hb_005673_010--Hb_005211_200 Hb_005673_010--Hb_007187_020 Hb_068533_010--Hb_004458_020 Hb_068533_010--Hb_005211_200 Hb_068533_010--Hb_007187_020 Hb_000696_280 Hb_000696_280 Hb_068533_010--Hb_000696_280 Hb_004458_020--Hb_005211_200 Hb_004458_020--Hb_007187_020 Hb_004458_020--Hb_000696_280 Hb_005211_200--Hb_007187_020 Hb_005211_200--Hb_000696_280 Hb_007187_020--Hb_000696_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00462409 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00330688 0

CAGE analysis