Hb_030619_010

Information

Type -
Description -
Location Contig30619: 9-446
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030619_010 0.0 - - -
2 Hb_029982_010 0.2260986442 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
3 Hb_042404_010 0.2298923296 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_000275_040 0.2350672356 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_010680_010 0.2421956748 - - -
6 Hb_000331_310 0.244673614 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
7 Hb_003209_030 0.2514535554 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
8 Hb_001047_140 0.2516424462 - - -
9 Hb_000670_030 0.2544812275 - - -
10 Hb_086859_010 0.2567320123 - - -
11 Hb_020730_010 0.2583527082 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
12 Hb_001864_030 0.2624284915 - - thioredoxin h [Hevea brasiliensis]
13 Hb_027428_030 0.267419348 - - unnamed protein product [Coffea canephora]
14 Hb_002045_270 0.2679798826 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
15 Hb_008078_030 0.2705249533 - - -
16 Hb_000329_530 0.2720679329 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
17 Hb_002863_010 0.2728778329 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
18 Hb_000445_330 0.2741662026 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004374_050 0.2803153676 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004712_180 0.2822543084 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_030619_010 Hb_030619_010 Hb_029982_010 Hb_029982_010 Hb_030619_010--Hb_029982_010 Hb_042404_010 Hb_042404_010 Hb_030619_010--Hb_042404_010 Hb_000275_040 Hb_000275_040 Hb_030619_010--Hb_000275_040 Hb_010680_010 Hb_010680_010 Hb_030619_010--Hb_010680_010 Hb_000331_310 Hb_000331_310 Hb_030619_010--Hb_000331_310 Hb_003209_030 Hb_003209_030 Hb_030619_010--Hb_003209_030 Hb_086859_010 Hb_086859_010 Hb_029982_010--Hb_086859_010 Hb_029982_010--Hb_042404_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_142522_010 Hb_142522_010 Hb_029982_010--Hb_142522_010 Hb_000445_330 Hb_000445_330 Hb_042404_010--Hb_000445_330 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_042404_010--Hb_086859_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500 Hb_070820_010 Hb_070820_010 Hb_042404_010--Hb_070820_010 Hb_000529_240 Hb_000529_240 Hb_000275_040--Hb_000529_240 Hb_000670_030 Hb_000670_030 Hb_000275_040--Hb_000670_030 Hb_069022_010 Hb_069022_010 Hb_000275_040--Hb_069022_010 Hb_000567_040 Hb_000567_040 Hb_000275_040--Hb_000567_040 Hb_000275_040--Hb_003209_030 Hb_142392_010 Hb_142392_010 Hb_010680_010--Hb_142392_010 Hb_001158_030 Hb_001158_030 Hb_010680_010--Hb_001158_030 Hb_015456_020 Hb_015456_020 Hb_010680_010--Hb_015456_020 Hb_004374_060 Hb_004374_060 Hb_010680_010--Hb_004374_060 Hb_145761_010 Hb_145761_010 Hb_010680_010--Hb_145761_010 Hb_005214_110 Hb_005214_110 Hb_010680_010--Hb_005214_110 Hb_084934_010 Hb_084934_010 Hb_000331_310--Hb_084934_010 Hb_002918_280 Hb_002918_280 Hb_000331_310--Hb_002918_280 Hb_004607_140 Hb_004607_140 Hb_000331_310--Hb_004607_140 Hb_000163_200 Hb_000163_200 Hb_000331_310--Hb_000163_200 Hb_010883_210 Hb_010883_210 Hb_000331_310--Hb_010883_210 Hb_003058_070 Hb_003058_070 Hb_000331_310--Hb_003058_070 Hb_000331_320 Hb_000331_320 Hb_003209_030--Hb_000331_320 Hb_008667_050 Hb_008667_050 Hb_003209_030--Hb_008667_050 Hb_000453_210 Hb_000453_210 Hb_003209_030--Hb_000453_210 Hb_003209_030--Hb_000529_240 Hb_001495_060 Hb_001495_060 Hb_003209_030--Hb_001495_060 Hb_001047_140 Hb_001047_140 Hb_003209_030--Hb_001047_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.719086 1.09441 0 0.269649 3.07782 1.564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85946 2.02331 0 0 0

CAGE analysis