Hb_030620_010

Information

Type -
Description -
Location Contig30620: 7981-13025
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32375: 8934-9223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030620_010 0.0 - - -
2 Hb_004223_230 0.10114358 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
3 Hb_102864_010 0.1025518076 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
4 Hb_000329_690 0.112717201 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_000117_040 0.1173538036 - - 30S ribosomal protein S6A [Hevea brasiliensis]
6 Hb_006452_060 0.1193069595 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_002200_110 0.1293988648 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000856_340 0.1307738503 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
9 Hb_033080_010 0.1323758131 - - -
10 Hb_000789_190 0.1346084567 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
11 Hb_000340_430 0.1367809288 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_007451_030 0.1370019822 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
13 Hb_001804_040 0.1388517228 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004813_010 0.1393513736 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_001191_100 0.1394497667 - - F-actin capping protein beta subunit [Populus trichocarpa]
16 Hb_008453_020 0.1395187195 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
17 Hb_001366_230 0.1404151856 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004295_020 0.1406011664 - - thioredoxin II-type 1 [Hevea brasiliensis]
19 Hb_000958_010 0.1415270716 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000345_560 0.141927116 - - -

Gene co-expression network

sample Hb_030620_010 Hb_030620_010 Hb_004223_230 Hb_004223_230 Hb_030620_010--Hb_004223_230 Hb_102864_010 Hb_102864_010 Hb_030620_010--Hb_102864_010 Hb_000329_690 Hb_000329_690 Hb_030620_010--Hb_000329_690 Hb_000117_040 Hb_000117_040 Hb_030620_010--Hb_000117_040 Hb_006452_060 Hb_006452_060 Hb_030620_010--Hb_006452_060 Hb_002200_110 Hb_002200_110 Hb_030620_010--Hb_002200_110 Hb_005031_070 Hb_005031_070 Hb_004223_230--Hb_005031_070 Hb_004295_020 Hb_004295_020 Hb_004223_230--Hb_004295_020 Hb_004223_230--Hb_000117_040 Hb_004223_230--Hb_102864_010 Hb_000313_380 Hb_000313_380 Hb_004223_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_102864_010--Hb_001804_040 Hb_001366_230 Hb_001366_230 Hb_102864_010--Hb_001366_230 Hb_000340_430 Hb_000340_430 Hb_102864_010--Hb_000340_430 Hb_007451_030 Hb_007451_030 Hb_102864_010--Hb_007451_030 Hb_168918_020 Hb_168918_020 Hb_000329_690--Hb_168918_020 Hb_000107_390 Hb_000107_390 Hb_000329_690--Hb_000107_390 Hb_004884_220 Hb_004884_220 Hb_000329_690--Hb_004884_220 Hb_000345_560 Hb_000345_560 Hb_000329_690--Hb_000345_560 Hb_033080_010 Hb_033080_010 Hb_000329_690--Hb_033080_010 Hb_001754_150 Hb_001754_150 Hb_000329_690--Hb_001754_150 Hb_011609_190 Hb_011609_190 Hb_000117_040--Hb_011609_190 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_001220_040 Hb_001220_040 Hb_006452_060--Hb_001220_040 Hb_000291_210 Hb_000291_210 Hb_006452_060--Hb_000291_210 Hb_000085_310 Hb_000085_310 Hb_006452_060--Hb_000085_310 Hb_030982_040 Hb_030982_040 Hb_006452_060--Hb_030982_040 Hb_000436_050 Hb_000436_050 Hb_006452_060--Hb_000436_050 Hb_017134_040 Hb_017134_040 Hb_002200_110--Hb_017134_040 Hb_009510_030 Hb_009510_030 Hb_002200_110--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_002200_110--Hb_000057_060 Hb_003404_030 Hb_003404_030 Hb_002200_110--Hb_003404_030 Hb_001115_050 Hb_001115_050 Hb_002200_110--Hb_001115_050 Hb_003786_110 Hb_003786_110 Hb_002200_110--Hb_003786_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59765 0.295846 0.195861 0.223748 3.56349 1.93095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8029 3.24042 2.48073 0.24563 0.203978

CAGE analysis