Hb_030627_040

Information

Type -
Description -
Location Contig30627: 62228-65407
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24080g
description POPTRDRAFT_838390; kinase family protein
nr
ID XP_012064945.1
description PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
swissprot
ID Q9LX66
description Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1
trembl
ID A0A067LIT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05631 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase herk 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32376: 61400-65275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030627_040 0.0 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
2 Hb_001390_010 0.1270610902 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
3 Hb_000040_050 0.127357798 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
4 Hb_006882_010 0.1322783644 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
5 Hb_002159_030 0.1401604715 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
6 Hb_005460_030 0.1446080709 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
7 Hb_003436_050 0.1446962893 - - arf gtpase-activating protein, putative [Ricinus communis]
8 Hb_001196_060 0.1469511527 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
9 Hb_001901_080 0.1486273658 - - PREDICTED: xylose isomerase [Jatropha curcas]
10 Hb_000037_110 0.1524257303 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
11 Hb_031069_020 0.1542529884 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
12 Hb_003243_020 0.154627447 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
13 Hb_004376_030 0.1602863421 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
14 Hb_002188_090 0.1643875934 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
15 Hb_002249_120 0.1659910487 - - RNA-binding protein, putative [Ricinus communis]
16 Hb_078477_040 0.1660777222 - - nuclear movement protein nudc, putative [Ricinus communis]
17 Hb_000735_100 0.1669280214 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
18 Hb_004920_060 0.1698940261 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
19 Hb_000029_320 0.1723256486 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
20 Hb_004324_240 0.1726263007 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_030627_040 Hb_030627_040 Hb_001390_010 Hb_001390_010 Hb_030627_040--Hb_001390_010 Hb_000040_050 Hb_000040_050 Hb_030627_040--Hb_000040_050 Hb_006882_010 Hb_006882_010 Hb_030627_040--Hb_006882_010 Hb_002159_030 Hb_002159_030 Hb_030627_040--Hb_002159_030 Hb_005460_030 Hb_005460_030 Hb_030627_040--Hb_005460_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_000037_110 Hb_000037_110 Hb_001390_010--Hb_000037_110 Hb_005527_030 Hb_005527_030 Hb_001390_010--Hb_005527_030 Hb_000749_110 Hb_000749_110 Hb_001390_010--Hb_000749_110 Hb_000207_190 Hb_000207_190 Hb_001390_010--Hb_000207_190 Hb_004635_080 Hb_004635_080 Hb_001390_010--Hb_004635_080 Hb_099698_010 Hb_099698_010 Hb_000040_050--Hb_099698_010 Hb_004712_110 Hb_004712_110 Hb_000040_050--Hb_004712_110 Hb_004376_030 Hb_004376_030 Hb_000040_050--Hb_004376_030 Hb_000261_520 Hb_000261_520 Hb_000040_050--Hb_000261_520 Hb_001534_070 Hb_001534_070 Hb_000040_050--Hb_001534_070 Hb_078477_040 Hb_078477_040 Hb_006882_010--Hb_078477_040 Hb_000329_490 Hb_000329_490 Hb_006882_010--Hb_000329_490 Hb_022250_110 Hb_022250_110 Hb_006882_010--Hb_022250_110 Hb_001901_080 Hb_001901_080 Hb_006882_010--Hb_001901_080 Hb_006002_030 Hb_006002_030 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_002159_040 Hb_002159_040 Hb_002159_030--Hb_002159_040 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_005460_030--Hb_004143_070 Hb_000181_310 Hb_000181_310 Hb_005460_030--Hb_000181_310 Hb_005460_030--Hb_002159_030 Hb_004324_240 Hb_004324_240 Hb_005460_030--Hb_004324_240 Hb_003216_120 Hb_003216_120 Hb_005460_030--Hb_003216_120 Hb_000029_320 Hb_000029_320 Hb_003436_050--Hb_000029_320 Hb_012404_070 Hb_012404_070 Hb_003436_050--Hb_012404_070 Hb_003029_130 Hb_003029_130 Hb_003436_050--Hb_003029_130 Hb_002249_120 Hb_002249_120 Hb_003436_050--Hb_002249_120 Hb_017895_020 Hb_017895_020 Hb_003436_050--Hb_017895_020 Hb_001473_090 Hb_001473_090 Hb_003436_050--Hb_001473_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2866 7.96259 4.01876 7.26486 30.5834 21.328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53782 0.790758 3.14488 2.61791 9.37992

CAGE analysis