Hb_030627_080

Information

Type -
Description -
Location Contig30627: 84618-87329
Sequence    

Annotation

kegg
ID rcu:RCOM_1263980
description protein with unknown function
nr
ID XP_002532809.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q3SZ21
description Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1
trembl
ID B9T3J0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1263980 PE=4 SV=1
Gene Ontology
ID GO:0004540
description polymerase histidinol phosphatase- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030627_080 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_024937_020 0.2109592481 - - -
3 Hb_135940_010 0.2313857192 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
4 Hb_000672_020 0.2431717216 - - Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 [Theobroma cacao]
5 Hb_002067_100 0.2454747439 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001579_310 0.2463802296 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
7 Hb_075359_010 0.2528020666 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_076175_010 0.2537615451 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
9 Hb_005128_040 0.2556458303 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002740_010 0.2557476478 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
11 Hb_042710_010 0.2600976505 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
12 Hb_030982_020 0.2646281625 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
13 Hb_098852_010 0.2649811662 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_008841_010 0.2652187241 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
15 Hb_021596_080 0.2680308722 - - 50S ribosomal protein L33A [Hevea brasiliensis]
16 Hb_183961_010 0.2695693022 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
17 Hb_000340_520 0.2706606563 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
18 Hb_000224_120 0.270978213 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
19 Hb_011457_090 0.2732690039 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
20 Hb_000120_190 0.2742303464 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]

Gene co-expression network

sample Hb_030627_080 Hb_030627_080 Hb_024937_020 Hb_024937_020 Hb_030627_080--Hb_024937_020 Hb_135940_010 Hb_135940_010 Hb_030627_080--Hb_135940_010 Hb_000672_020 Hb_000672_020 Hb_030627_080--Hb_000672_020 Hb_002067_100 Hb_002067_100 Hb_030627_080--Hb_002067_100 Hb_001579_310 Hb_001579_310 Hb_030627_080--Hb_001579_310 Hb_075359_010 Hb_075359_010 Hb_030627_080--Hb_075359_010 Hb_024937_020--Hb_000672_020 Hb_000427_070 Hb_000427_070 Hb_024937_020--Hb_000427_070 Hb_074979_010 Hb_074979_010 Hb_024937_020--Hb_074979_010 Hb_001517_020 Hb_001517_020 Hb_024937_020--Hb_001517_020 Hb_001268_090 Hb_001268_090 Hb_024937_020--Hb_001268_090 Hb_021596_080 Hb_021596_080 Hb_135940_010--Hb_021596_080 Hb_076175_010 Hb_076175_010 Hb_135940_010--Hb_076175_010 Hb_011644_010 Hb_011644_010 Hb_135940_010--Hb_011644_010 Hb_030982_020 Hb_030982_020 Hb_135940_010--Hb_030982_020 Hb_001935_150 Hb_001935_150 Hb_135940_010--Hb_001935_150 Hb_002740_010 Hb_002740_010 Hb_135940_010--Hb_002740_010 Hb_003352_040 Hb_003352_040 Hb_000672_020--Hb_003352_040 Hb_011537_110 Hb_011537_110 Hb_000672_020--Hb_011537_110 Hb_001504_080 Hb_001504_080 Hb_000672_020--Hb_001504_080 Hb_002422_070 Hb_002422_070 Hb_000672_020--Hb_002422_070 Hb_012794_010 Hb_012794_010 Hb_000672_020--Hb_012794_010 Hb_012653_040 Hb_012653_040 Hb_000672_020--Hb_012653_040 Hb_003032_100 Hb_003032_100 Hb_002067_100--Hb_003032_100 Hb_000012_230 Hb_000012_230 Hb_002067_100--Hb_000012_230 Hb_004333_030 Hb_004333_030 Hb_002067_100--Hb_004333_030 Hb_000896_120 Hb_000896_120 Hb_002067_100--Hb_000896_120 Hb_088202_010 Hb_088202_010 Hb_002067_100--Hb_088202_010 Hb_000115_050 Hb_000115_050 Hb_002067_100--Hb_000115_050 Hb_007594_090 Hb_007594_090 Hb_001579_310--Hb_007594_090 Hb_000313_010 Hb_000313_010 Hb_001579_310--Hb_000313_010 Hb_003561_030 Hb_003561_030 Hb_001579_310--Hb_003561_030 Hb_002843_210 Hb_002843_210 Hb_001579_310--Hb_002843_210 Hb_002539_090 Hb_002539_090 Hb_001579_310--Hb_002539_090 Hb_012423_050 Hb_012423_050 Hb_001579_310--Hb_012423_050 Hb_075359_010--Hb_002843_210 Hb_075359_010--Hb_001935_150 Hb_042710_010 Hb_042710_010 Hb_075359_010--Hb_042710_010 Hb_000025_240 Hb_000025_240 Hb_075359_010--Hb_000025_240 Hb_075359_010--Hb_004333_030 Hb_187083_010 Hb_187083_010 Hb_075359_010--Hb_187083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0233597 0 0 0.0611331 0 0.0673833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0535436 0.0421101 0.077278 0.0339062 0

CAGE analysis