Hb_030736_010

Information

Type -
Description -
Location Contig30736: 5921-7011
Sequence    

Annotation

kegg
ID rcu:RCOM_1032120
description hypothetical protein
nr
ID XP_002513800.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJ81
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1032120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32465: 5886-6942
cDNA
(Sanger)
(ID:Location)		 008_D24.ab1: 6110-6932 , 019_F24.ab1: 5886-6942 , 042_D17.ab1: 6110-6932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001004_040 0.1714812722 - - conserved hypothetical protein [Ricinus communis]
3 Hb_127003_010 0.1756312521 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
4 Hb_001140_200 0.1774699413 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
5 Hb_182424_010 0.1828213148 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
6 Hb_011909_040 0.1834293258 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
7 Hb_001946_280 0.1931841902 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002740_130 0.1962125574 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
9 Hb_000789_190 0.1965085938 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
10 Hb_000025_480 0.1992803816 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
11 Hb_170193_010 0.1999552778 - - JHL25H03.10 [Jatropha curcas]
12 Hb_134310_010 0.2007409018 - - PREDICTED: ATP-dependent DNA helicase MER3 homolog [Jatropha curcas]
13 Hb_007152_020 0.2043601801 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
14 Hb_098993_010 0.2068390068 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
15 Hb_005657_010 0.2093948818 - - -
16 Hb_001981_070 0.2096225426 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
17 Hb_003060_070 0.2097182142 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_001999_060 0.2111147316 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
19 Hb_000139_380 0.2111948832 - - conserved hypothetical protein [Ricinus communis]
20 Hb_141939_010 0.2121809388 - - PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_030736_010 Hb_030736_010 Hb_001004_040 Hb_001004_040 Hb_030736_010--Hb_001004_040 Hb_127003_010 Hb_127003_010 Hb_030736_010--Hb_127003_010 Hb_001140_200 Hb_001140_200 Hb_030736_010--Hb_001140_200 Hb_182424_010 Hb_182424_010 Hb_030736_010--Hb_182424_010 Hb_011909_040 Hb_011909_040 Hb_030736_010--Hb_011909_040 Hb_001946_280 Hb_001946_280 Hb_030736_010--Hb_001946_280 Hb_002739_110 Hb_002739_110 Hb_001004_040--Hb_002739_110 Hb_150651_050 Hb_150651_050 Hb_001004_040--Hb_150651_050 Hb_000380_180 Hb_000380_180 Hb_001004_040--Hb_000380_180 Hb_085863_020 Hb_085863_020 Hb_001004_040--Hb_085863_020 Hb_000025_480 Hb_000025_480 Hb_001004_040--Hb_000025_480 Hb_000249_130 Hb_000249_130 Hb_001004_040--Hb_000249_130 Hb_000041_150 Hb_000041_150 Hb_127003_010--Hb_000041_150 Hb_127003_010--Hb_182424_010 Hb_170193_010 Hb_170193_010 Hb_127003_010--Hb_170193_010 Hb_153258_010 Hb_153258_010 Hb_127003_010--Hb_153258_010 Hb_000139_380 Hb_000139_380 Hb_127003_010--Hb_000139_380 Hb_098993_010 Hb_098993_010 Hb_127003_010--Hb_098993_010 Hb_057183_040 Hb_057183_040 Hb_001140_200--Hb_057183_040 Hb_001673_120 Hb_001673_120 Hb_001140_200--Hb_001673_120 Hb_001823_100 Hb_001823_100 Hb_001140_200--Hb_001823_100 Hb_001936_050 Hb_001936_050 Hb_001140_200--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_001140_200--Hb_001981_070 Hb_000028_470 Hb_000028_470 Hb_001140_200--Hb_000028_470 Hb_099864_010 Hb_099864_010 Hb_182424_010--Hb_099864_010 Hb_011287_090 Hb_011287_090 Hb_182424_010--Hb_011287_090 Hb_011218_060 Hb_011218_060 Hb_182424_010--Hb_011218_060 Hb_182424_010--Hb_170193_010 Hb_182424_010--Hb_000041_150 Hb_001488_100 Hb_001488_100 Hb_011909_040--Hb_001488_100 Hb_000340_430 Hb_000340_430 Hb_011909_040--Hb_000340_430 Hb_002007_270 Hb_002007_270 Hb_011909_040--Hb_002007_270 Hb_001999_060 Hb_001999_060 Hb_011909_040--Hb_001999_060 Hb_000789_190 Hb_000789_190 Hb_011909_040--Hb_000789_190 Hb_000193_250 Hb_000193_250 Hb_011909_040--Hb_000193_250 Hb_011639_050 Hb_011639_050 Hb_001946_280--Hb_011639_050 Hb_000369_060 Hb_000369_060 Hb_001946_280--Hb_000369_060 Hb_002740_130 Hb_002740_130 Hb_001946_280--Hb_002740_130 Hb_008453_150 Hb_008453_150 Hb_001946_280--Hb_008453_150 Hb_003060_070 Hb_003060_070 Hb_001946_280--Hb_003060_070 Hb_185467_010 Hb_185467_010 Hb_001946_280--Hb_185467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25493 0.12311 1.7414 0.306724 3.80648 3.31795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3828 2.40647 6.39503 1.39951 0

CAGE analysis