Hb_030736_020

Information

Type -
Description -
Location Contig30736: 13212-17594
Sequence    

Annotation

kegg
ID rcu:RCOM_1191090
description hypothetical protein
nr
ID XP_002516337.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFE9
description GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1
trembl
ID B9RRG8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1191090 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32466: 13244-17580 , PASA_asmbl_32467: 15998-16266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002053_140 0.0497028976 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
3 Hb_004627_040 0.0677441973 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
4 Hb_000141_080 0.0708844955 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
5 Hb_001427_160 0.0717734509 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_012796_020 0.0720885253 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
7 Hb_001232_190 0.0770182455 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
8 Hb_006618_120 0.0803836844 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
9 Hb_001269_330 0.083020082 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
10 Hb_001633_130 0.0843726846 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
11 Hb_001882_050 0.0846454801 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
12 Hb_000146_050 0.0858306217 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
13 Hb_000300_630 0.087226515 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
14 Hb_002641_060 0.0886695102 - - prefoldin subunit, putative [Ricinus communis]
15 Hb_001366_370 0.0891079607 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
16 Hb_027380_060 0.0894868069 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
17 Hb_000107_230 0.0897701151 - - unknown [Medicago truncatula]
18 Hb_005797_010 0.0909259265 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
19 Hb_003929_270 0.0914897456 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
20 Hb_007481_010 0.092380465 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]

Gene co-expression network

sample Hb_030736_020 Hb_030736_020 Hb_002053_140 Hb_002053_140 Hb_030736_020--Hb_002053_140 Hb_004627_040 Hb_004627_040 Hb_030736_020--Hb_004627_040 Hb_000141_080 Hb_000141_080 Hb_030736_020--Hb_000141_080 Hb_001427_160 Hb_001427_160 Hb_030736_020--Hb_001427_160 Hb_012796_020 Hb_012796_020 Hb_030736_020--Hb_012796_020 Hb_001232_190 Hb_001232_190 Hb_030736_020--Hb_001232_190 Hb_002053_140--Hb_001427_160 Hb_002053_140--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_001366_370 Hb_001366_370 Hb_002053_140--Hb_001366_370 Hb_002053_140--Hb_012796_020 Hb_006618_120 Hb_006618_120 Hb_004627_040--Hb_006618_120 Hb_013575_010 Hb_013575_010 Hb_004627_040--Hb_013575_010 Hb_000300_630 Hb_000300_630 Hb_004627_040--Hb_000300_630 Hb_004990_010 Hb_004990_010 Hb_004627_040--Hb_004990_010 Hb_008246_060 Hb_008246_060 Hb_004627_040--Hb_008246_060 Hb_000141_080--Hb_001366_370 Hb_009787_030 Hb_009787_030 Hb_000141_080--Hb_009787_030 Hb_000735_110 Hb_000735_110 Hb_000141_080--Hb_000735_110 Hb_000141_080--Hb_001427_160 Hb_001427_160--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001427_160--Hb_000510_300 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001427_160--Hb_001366_370 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060 Hb_001699_100 Hb_001699_100 Hb_012796_020--Hb_001699_100 Hb_012796_020--Hb_006618_120 Hb_012796_020--Hb_003929_270 Hb_001124_020 Hb_001124_020 Hb_012796_020--Hb_001124_020 Hb_008616_050 Hb_008616_050 Hb_001232_190--Hb_008616_050 Hb_000579_120 Hb_000579_120 Hb_001232_190--Hb_000579_120 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_002641_060 Hb_002641_060 Hb_001232_190--Hb_002641_060 Hb_000058_130 Hb_000058_130 Hb_001232_190--Hb_000058_130 Hb_000207_150 Hb_000207_150 Hb_001232_190--Hb_000207_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0912 10.7522 19.5697 41.529 24.0922 22.2827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9607 23.282 17.8991 16.2372 17.7267

CAGE analysis