Hb_030736_060

Information

Type -
Description -
Location Contig30736: 39626-42555
Sequence    

Annotation

kegg
ID rcu:RCOM_1032080
description LysM domain GPI-anchored protein 1 precursor, putative
nr
ID XP_012078223.1
description PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
swissprot
ID Q93ZH0
description LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=LYM1 PE=1 SV=1
trembl
ID A0A067KKK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32477: 40058-42545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_060 0.0 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
2 Hb_016347_020 0.0896051323 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
3 Hb_000684_080 0.090800985 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
4 Hb_121089_030 0.0913858521 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
5 Hb_000963_040 0.1039833843 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
6 Hb_000261_210 0.1058461302 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_001227_130 0.1061904175 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
8 Hb_030982_030 0.1081409378 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
9 Hb_000320_290 0.1085319916 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
10 Hb_161568_010 0.1089598977 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_000371_090 0.1092256318 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
12 Hb_142218_020 0.1103157119 - - actin family protein [Populus trichocarpa]
13 Hb_000600_060 0.1104056618 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
14 Hb_001141_310 0.1113038177 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
15 Hb_000161_210 0.1114529848 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
16 Hb_030982_010 0.1115567416 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000836_300 0.1132814628 - - caax prenyl protease ste24, putative [Ricinus communis]
18 Hb_000054_040 0.1149041692 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
19 Hb_000139_530 0.114948723 - - conserved hypothetical protein [Ricinus communis]
20 Hb_029695_050 0.1171222563 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_030736_060 Hb_030736_060 Hb_016347_020 Hb_016347_020 Hb_030736_060--Hb_016347_020 Hb_000684_080 Hb_000684_080 Hb_030736_060--Hb_000684_080 Hb_121089_030 Hb_121089_030 Hb_030736_060--Hb_121089_030 Hb_000963_040 Hb_000963_040 Hb_030736_060--Hb_000963_040 Hb_000261_210 Hb_000261_210 Hb_030736_060--Hb_000261_210 Hb_001227_130 Hb_001227_130 Hb_030736_060--Hb_001227_130 Hb_016347_020--Hb_000684_080 Hb_016347_020--Hb_000963_040 Hb_000330_060 Hb_000330_060 Hb_016347_020--Hb_000330_060 Hb_001002_060 Hb_001002_060 Hb_016347_020--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_016347_020--Hb_004096_060 Hb_003119_090 Hb_003119_090 Hb_016347_020--Hb_003119_090 Hb_000684_080--Hb_121089_030 Hb_000317_510 Hb_000317_510 Hb_000684_080--Hb_000317_510 Hb_000373_080 Hb_000373_080 Hb_000684_080--Hb_000373_080 Hb_002784_030 Hb_002784_030 Hb_000684_080--Hb_002784_030 Hb_000017_230 Hb_000017_230 Hb_121089_030--Hb_000017_230 Hb_030982_010 Hb_030982_010 Hb_121089_030--Hb_030982_010 Hb_021165_010 Hb_021165_010 Hb_121089_030--Hb_021165_010 Hb_000320_290 Hb_000320_290 Hb_121089_030--Hb_000320_290 Hb_001552_030 Hb_001552_030 Hb_121089_030--Hb_001552_030 Hb_010042_030 Hb_010042_030 Hb_121089_030--Hb_010042_030 Hb_030982_030 Hb_030982_030 Hb_000963_040--Hb_030982_030 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_000600_060 Hb_000600_060 Hb_000963_040--Hb_000600_060 Hb_000963_040--Hb_003119_090 Hb_000963_040--Hb_001227_130 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_000445_050 Hb_000445_050 Hb_001227_130--Hb_000445_050 Hb_001227_130--Hb_003119_090 Hb_000879_180 Hb_000879_180 Hb_001227_130--Hb_000879_180 Hb_011282_060 Hb_011282_060 Hb_001227_130--Hb_011282_060 Hb_001227_130--Hb_002351_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3425 9.43963 17.2516 22.3439 11.1159 10.3004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24343 2.88273 8.38578 13.3983 5.48516

CAGE analysis