Hb_030736_080

Information

Type -
Description -
Location Contig30736: 49089-53187
Sequence    

Annotation

kegg
ID rcu:RCOM_1031960
description hypothetical protein
nr
ID XP_002513794.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJ75
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031960 PE=4 SV=1
Gene Ontology
ID GO:0003746
description rrp15-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32481: 49118-53037
cDNA
(Sanger)
(ID:Location)		 009_F11.ab1: 51376-52970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000987_070 0.0782514507 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
3 Hb_000905_060 0.0787659511 - - protein with unknown function [Ricinus communis]
4 Hb_000635_180 0.078830879 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_001832_060 0.0832121966 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
6 Hb_004453_170 0.0845656352 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
7 Hb_001247_100 0.0851018603 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
8 Hb_134949_020 0.0863925807 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
9 Hb_024071_020 0.0874564905 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
10 Hb_002301_140 0.0879040481 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
11 Hb_000111_330 0.0881954305 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
12 Hb_003787_010 0.0886388425 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
13 Hb_033594_110 0.0886504966 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
14 Hb_000115_220 0.0907159073 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
15 Hb_021068_040 0.092346706 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
16 Hb_000462_130 0.0925594373 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
17 Hb_165132_010 0.0937204755 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
18 Hb_005846_040 0.0949827219 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
19 Hb_000201_120 0.095000442 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
20 Hb_000001_060 0.0950179329 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_030736_080 Hb_030736_080 Hb_000987_070 Hb_000987_070 Hb_030736_080--Hb_000987_070 Hb_000905_060 Hb_000905_060 Hb_030736_080--Hb_000905_060 Hb_000635_180 Hb_000635_180 Hb_030736_080--Hb_000635_180 Hb_001832_060 Hb_001832_060 Hb_030736_080--Hb_001832_060 Hb_004453_170 Hb_004453_170 Hb_030736_080--Hb_004453_170 Hb_001247_100 Hb_001247_100 Hb_030736_080--Hb_001247_100 Hb_001105_070 Hb_001105_070 Hb_000987_070--Hb_001105_070 Hb_065525_020 Hb_065525_020 Hb_000987_070--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_000987_070--Hb_002030_040 Hb_000705_210 Hb_000705_210 Hb_000987_070--Hb_000705_210 Hb_000201_120 Hb_000201_120 Hb_000987_070--Hb_000201_120 Hb_029388_020 Hb_029388_020 Hb_000905_060--Hb_029388_020 Hb_024071_020 Hb_024071_020 Hb_000905_060--Hb_024071_020 Hb_027472_040 Hb_027472_040 Hb_000905_060--Hb_027472_040 Hb_003787_010 Hb_003787_010 Hb_000905_060--Hb_003787_010 Hb_003126_050 Hb_003126_050 Hb_000905_060--Hb_003126_050 Hb_002284_010 Hb_002284_010 Hb_000635_180--Hb_002284_010 Hb_002301_140 Hb_002301_140 Hb_000635_180--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_000635_180--Hb_028995_040 Hb_005941_040 Hb_005941_040 Hb_000635_180--Hb_005941_040 Hb_001235_190 Hb_001235_190 Hb_000635_180--Hb_001235_190 Hb_001832_060--Hb_004453_170 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_001247_100--Hb_000987_070 Hb_003502_060 Hb_003502_060 Hb_001247_100--Hb_003502_060 Hb_004052_050 Hb_004052_050 Hb_001247_100--Hb_004052_050 Hb_000005_080 Hb_000005_080 Hb_001247_100--Hb_000005_080 Hb_021068_040 Hb_021068_040 Hb_001247_100--Hb_021068_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.0455 37.412 33.364 48.961 37.2183 35.1781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.2461 96.3504 52.3271 22.8422 15.0401

CAGE analysis