Hb_030736_100

Information

Type -
Description -
Location Contig30736: 59465-66340
Sequence    

Annotation

kegg
ID rcu:RCOM_1190860
description hypothetical protein
nr
ID XP_002516334.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RRG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1190860 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcriptional regulator atrx homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32484: 59528-66223 , PASA_asmbl_32485: 64169-66201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003939_050 0.0671974915 - - protein with unknown function [Ricinus communis]
3 Hb_003025_110 0.0684827633 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
4 Hb_000883_020 0.0697776537 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
5 Hb_000575_040 0.0699399618 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
6 Hb_002271_030 0.070435849 - - Vacuolar protein sorting protein, putative [Ricinus communis]
7 Hb_000879_200 0.0706794836 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
8 Hb_007575_050 0.0715570295 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
9 Hb_001141_020 0.0717410396 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
10 Hb_029879_010 0.0718913841 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
11 Hb_004155_010 0.072271867 - - PREDICTED: la protein 1 [Jatropha curcas]
12 Hb_000160_210 0.0738356138 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004410_030 0.0757870006 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_188063_020 0.0758340854 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009545_080 0.0760973354 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
16 Hb_004619_030 0.0771964839 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
17 Hb_000498_010 0.0779051314 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_004963_030 0.0780610034 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000390_180 0.0787744922 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
20 Hb_165928_020 0.079267173 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_030736_100 Hb_030736_100 Hb_003939_050 Hb_003939_050 Hb_030736_100--Hb_003939_050 Hb_003025_110 Hb_003025_110 Hb_030736_100--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_030736_100--Hb_000883_020 Hb_000575_040 Hb_000575_040 Hb_030736_100--Hb_000575_040 Hb_002271_030 Hb_002271_030 Hb_030736_100--Hb_002271_030 Hb_000879_200 Hb_000879_200 Hb_030736_100--Hb_000879_200 Hb_029879_010 Hb_029879_010 Hb_003939_050--Hb_029879_010 Hb_003939_050--Hb_000883_020 Hb_000819_080 Hb_000819_080 Hb_003939_050--Hb_000819_080 Hb_001141_020 Hb_001141_020 Hb_003939_050--Hb_001141_020 Hb_007632_030 Hb_007632_030 Hb_003939_050--Hb_007632_030 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_001089_110 Hb_001089_110 Hb_000575_040--Hb_001089_110 Hb_000417_130 Hb_000417_130 Hb_000575_040--Hb_000417_130 Hb_000331_110 Hb_000331_110 Hb_000575_040--Hb_000331_110 Hb_063716_100 Hb_063716_100 Hb_000575_040--Hb_063716_100 Hb_000575_040--Hb_009545_080 Hb_002271_030--Hb_004410_030 Hb_002271_030--Hb_000011_200 Hb_002271_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_002271_030--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_002271_030--Hb_001493_030 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_006620_020 Hb_006620_020 Hb_000879_200--Hb_006620_020 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000853_230 Hb_000853_230 Hb_000879_200--Hb_000853_230 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.266 13.3535 17.9556 8.92977 21.3293 27.6832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3967 17.397 20.5901 19.232 18.1908

CAGE analysis