Hb_030827_010

Information

Type transcription factor
Description TF Family: HB
Location Contig30827: 5153-10584
Sequence    

Annotation

kegg
ID rcu:RCOM_1496700
description homeobox protein, putative
nr
ID KHG01515.1
description Homeobox-leucine zipper ROC6 [Gossypium arboreum]
swissprot
ID Q9LTK3
description Homeobox-leucine zipper protein HDG7 OS=Arabidopsis thaliana GN=HDG7 PE=2 SV=1
trembl
ID A0A0B0ML56
description Homeobox-leucine zipper ROC6 OS=Gossypium arboreum GN=F383_22368 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein anthocyaninless 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32542: 5609-6484 , PASA_asmbl_32543: 7097-10502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030827_010 0.0 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
2 Hb_003145_010 0.0704188471 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
3 Hb_069696_020 0.07740674 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
4 Hb_000627_050 0.1020061109 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
5 Hb_016924_010 0.1038711316 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000703_120 0.1070731014 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
7 Hb_001278_090 0.109087024 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
8 Hb_000140_460 0.1095765989 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
9 Hb_000705_040 0.1108951118 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003141_060 0.1117951655 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
11 Hb_000318_010 0.1118266823 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
12 Hb_001248_070 0.1124267135 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
13 Hb_001417_060 0.1155460011 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
14 Hb_029223_010 0.1158592828 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
15 Hb_002724_010 0.1158670059 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
16 Hb_002890_200 0.1167385855 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
17 Hb_131876_010 0.1169424002 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
18 Hb_097335_010 0.1171790192 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_000212_410 0.1175495963 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
20 Hb_005493_010 0.1176724917 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_030827_010 Hb_030827_010 Hb_003145_010 Hb_003145_010 Hb_030827_010--Hb_003145_010 Hb_069696_020 Hb_069696_020 Hb_030827_010--Hb_069696_020 Hb_000627_050 Hb_000627_050 Hb_030827_010--Hb_000627_050 Hb_016924_010 Hb_016924_010 Hb_030827_010--Hb_016924_010 Hb_000703_120 Hb_000703_120 Hb_030827_010--Hb_000703_120 Hb_001278_090 Hb_001278_090 Hb_030827_010--Hb_001278_090 Hb_011242_010 Hb_011242_010 Hb_003145_010--Hb_011242_010 Hb_001417_060 Hb_001417_060 Hb_003145_010--Hb_001417_060 Hb_003145_010--Hb_000627_050 Hb_029223_010 Hb_029223_010 Hb_003145_010--Hb_029223_010 Hb_003145_010--Hb_016924_010 Hb_131876_010 Hb_131876_010 Hb_069696_020--Hb_131876_010 Hb_002073_150 Hb_002073_150 Hb_069696_020--Hb_002073_150 Hb_069696_020--Hb_000627_050 Hb_000984_160 Hb_000984_160 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_000212_410 Hb_000212_410 Hb_000627_050--Hb_000212_410 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_007270_020 Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_016924_010--Hb_029223_010 Hb_003195_080 Hb_003195_080 Hb_016924_010--Hb_003195_080 Hb_000270_640 Hb_000270_640 Hb_016924_010--Hb_000270_640 Hb_016924_010--Hb_069696_020 Hb_000703_120--Hb_009788_020 Hb_000703_120--Hb_000212_410 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_002724_010 Hb_002724_010 Hb_000703_120--Hb_002724_010 Hb_000703_120--Hb_007270_020 Hb_000181_220 Hb_000181_220 Hb_001278_090--Hb_000181_220 Hb_000140_500 Hb_000140_500 Hb_001278_090--Hb_000140_500 Hb_000416_090 Hb_000416_090 Hb_001278_090--Hb_000416_090 Hb_002949_020 Hb_002949_020 Hb_001278_090--Hb_002949_020 Hb_000130_480 Hb_000130_480 Hb_001278_090--Hb_000130_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119368 1.12834 3.90528 3.41058 0 0.0691826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0563319 0.0738769 0.0562673 1.40876 6.39859

CAGE analysis