Hb_030827_020

Information

Type -
Description -
Location Contig30827: 11660-12970
Sequence    

Annotation

kegg
ID rcu:RCOM_1496680
description hypothetical protein
nr
ID XP_012090291.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067JQN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26141 PE=4 SV=1
Gene Ontology
ID GO:0016787
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 036_B15.ab1: 11467-12233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030827_020 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
2 Hb_002267_140 0.0642634956 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
3 Hb_003894_120 0.0690532311 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
4 Hb_000025_730 0.0704134304 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
5 Hb_000479_220 0.0722209058 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
6 Hb_000803_070 0.0736515471 - - PREDICTED: protein TRAUCO [Jatropha curcas]
7 Hb_002843_120 0.0746516806 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
8 Hb_002276_240 0.0747136568 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
9 Hb_000603_280 0.0789510956 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
10 Hb_024621_040 0.0797487382 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
11 Hb_000861_080 0.0798875165 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_000061_240 0.0799189642 - - kinase, putative [Ricinus communis]
13 Hb_000120_130 0.0802097288 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
14 Hb_138596_010 0.080818507 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
15 Hb_002329_020 0.0823130024 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
16 Hb_002028_210 0.0826267095 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
17 Hb_000334_220 0.0826523463 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
18 Hb_000077_140 0.0830122452 - - structural constituent of cell wall, putative [Ricinus communis]
19 Hb_001195_530 0.0832844633 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001754_030 0.0842170906 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]

Gene co-expression network

sample Hb_030827_020 Hb_030827_020 Hb_002267_140 Hb_002267_140 Hb_030827_020--Hb_002267_140 Hb_003894_120 Hb_003894_120 Hb_030827_020--Hb_003894_120 Hb_000025_730 Hb_000025_730 Hb_030827_020--Hb_000025_730 Hb_000479_220 Hb_000479_220 Hb_030827_020--Hb_000479_220 Hb_000803_070 Hb_000803_070 Hb_030827_020--Hb_000803_070 Hb_002843_120 Hb_002843_120 Hb_030827_020--Hb_002843_120 Hb_008253_030 Hb_008253_030 Hb_002267_140--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002267_140--Hb_002843_120 Hb_001754_030 Hb_001754_030 Hb_003894_120--Hb_001754_030 Hb_000739_180 Hb_000739_180 Hb_003894_120--Hb_000739_180 Hb_000227_270 Hb_000227_270 Hb_003894_120--Hb_000227_270 Hb_002329_020 Hb_002329_020 Hb_003894_120--Hb_002329_020 Hb_003398_080 Hb_003398_080 Hb_003894_120--Hb_003398_080 Hb_002073_200 Hb_002073_200 Hb_000025_730--Hb_002073_200 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_162275_050 Hb_162275_050 Hb_000025_730--Hb_162275_050 Hb_000479_220--Hb_008253_030 Hb_000070_080 Hb_000070_080 Hb_000479_220--Hb_000070_080 Hb_000479_220--Hb_138596_010 Hb_002615_090 Hb_002615_090 Hb_000479_220--Hb_002615_090 Hb_000479_220--Hb_002253_080 Hb_000479_220--Hb_002843_120 Hb_000861_080 Hb_000861_080 Hb_000803_070--Hb_000861_080 Hb_001728_050 Hb_001728_050 Hb_000803_070--Hb_001728_050 Hb_032264_060 Hb_032264_060 Hb_000803_070--Hb_032264_060 Hb_003929_280 Hb_003929_280 Hb_000803_070--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_000803_070--Hb_001751_140 Hb_003927_040 Hb_003927_040 Hb_000803_070--Hb_003927_040 Hb_000603_280 Hb_000603_280 Hb_002843_120--Hb_000603_280 Hb_002843_120--Hb_138596_010 Hb_000077_140 Hb_000077_140 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_013399_100 Hb_013399_100 Hb_002843_120--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6451 14.8405 9.6404 11.4711 8.89158 8.77788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95401 7.61478 11.1663 5.89597 8.54378

CAGE analysis