Hb_030827_050

Information

Type -
Description -
Location Contig30827: 31086-32630
Sequence    

Annotation

kegg
ID cic:CICLE_v10006606mg
description hypothetical protein
nr
ID KDO60053.1
description hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID A0A067EY74
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g040641mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description leucine-rich repeat receptor protein kinase exs precursor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32550: 31931-32161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030827_050 0.0 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
2 Hb_151497_010 0.2319971221 - - -
3 Hb_007101_220 0.2517940895 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
4 Hb_006810_070 0.2818580032 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_000908_010 0.2880232497 - - Disease resistance protein RGA2, putative [Ricinus communis]
6 Hb_001545_230 0.311899404 - - Nonspecific lipid-transfer protein A, putative [Ricinus communis]
7 Hb_118346_010 0.3129182485 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_000905_150 0.3218592104 - - Cytochrome P450 [Theobroma cacao]
9 Hb_000061_380 0.3264230845 - - conserved hypothetical protein [Ricinus communis]
10 Hb_022250_120 0.3439461034 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
11 Hb_000097_040 0.3464194512 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
12 Hb_010565_020 0.3575019124 - - -
13 Hb_000107_320 0.3584938699 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
14 Hb_007481_020 0.3595472107 - - -
15 Hb_008983_060 0.3597858157 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
16 Hb_001999_190 0.3603490385 - - GDP-mannose transporter, putative [Ricinus communis]
17 Hb_001369_310 0.3608364899 - - tonoplast intrinsic protein, putative [Ricinus communis]
18 Hb_006083_060 0.3637411221 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
19 Hb_103452_020 0.3641811675 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_000740_030 0.3675787005 - - hypothetical protein VITISV_038271 [Vitis vinifera]

Gene co-expression network

sample Hb_030827_050 Hb_030827_050 Hb_151497_010 Hb_151497_010 Hb_030827_050--Hb_151497_010 Hb_007101_220 Hb_007101_220 Hb_030827_050--Hb_007101_220 Hb_006810_070 Hb_006810_070 Hb_030827_050--Hb_006810_070 Hb_000908_010 Hb_000908_010 Hb_030827_050--Hb_000908_010 Hb_001545_230 Hb_001545_230 Hb_030827_050--Hb_001545_230 Hb_118346_010 Hb_118346_010 Hb_030827_050--Hb_118346_010 Hb_151497_010--Hb_007101_220 Hb_010863_040 Hb_010863_040 Hb_151497_010--Hb_010863_040 Hb_000069_080 Hb_000069_080 Hb_151497_010--Hb_000069_080 Hb_002835_130 Hb_002835_130 Hb_151497_010--Hb_002835_130 Hb_151497_010--Hb_001545_230 Hb_007101_220--Hb_006810_070 Hb_000905_150 Hb_000905_150 Hb_007101_220--Hb_000905_150 Hb_003117_050 Hb_003117_050 Hb_007101_220--Hb_003117_050 Hb_003238_030 Hb_003238_030 Hb_007101_220--Hb_003238_030 Hb_000123_250 Hb_000123_250 Hb_006810_070--Hb_000123_250 Hb_006810_070--Hb_003238_030 Hb_010565_020 Hb_010565_020 Hb_006810_070--Hb_010565_020 Hb_006083_060 Hb_006083_060 Hb_006810_070--Hb_006083_060 Hb_000908_010--Hb_001545_230 Hb_008983_060 Hb_008983_060 Hb_000908_010--Hb_008983_060 Hb_000107_320 Hb_000107_320 Hb_000908_010--Hb_000107_320 Hb_003947_010 Hb_003947_010 Hb_000908_010--Hb_003947_010 Hb_001999_190 Hb_001999_190 Hb_000908_010--Hb_001999_190 Hb_001617_030 Hb_001617_030 Hb_001545_230--Hb_001617_030 Hb_001514_080 Hb_001514_080 Hb_001545_230--Hb_001514_080 Hb_005085_010 Hb_005085_010 Hb_001545_230--Hb_005085_010 Hb_000010_120 Hb_000010_120 Hb_001545_230--Hb_000010_120 Hb_002325_020 Hb_002325_020 Hb_001545_230--Hb_002325_020 Hb_014919_020 Hb_014919_020 Hb_118346_010--Hb_014919_020 Hb_059301_010 Hb_059301_010 Hb_118346_010--Hb_059301_010 Hb_004330_030 Hb_004330_030 Hb_118346_010--Hb_004330_030 Hb_001944_030 Hb_001944_030 Hb_118346_010--Hb_001944_030 Hb_001214_170 Hb_001214_170 Hb_118346_010--Hb_001214_170 Hb_113823_010 Hb_113823_010 Hb_118346_010--Hb_113823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0884089 0.150324 0.0840917 0 0.280211 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.337053 0

CAGE analysis