Hb_030885_020

Information

Type -
Description -
Location Contig30885: 2553-2865
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030885_020 0.0 - - -
2 Hb_154381_010 0.1661957615 - - -
3 Hb_003551_040 0.1721494503 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
4 Hb_004770_060 0.2139324791 - - unnamed protein product, partial [Coffea canephora]
5 Hb_005597_010 0.2311959439 - - -
6 Hb_060585_010 0.2327814969 - - unnamed protein product [Coffea canephora]
7 Hb_020532_010 0.2487655846 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
8 Hb_001832_220 0.2529366048 - - -
9 Hb_002368_090 0.2551335734 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
10 Hb_003455_010 0.2557592639 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
11 Hb_021068_030 0.2623776364 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
12 Hb_002311_460 0.2650703882 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_001278_080 0.27337532 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
14 Hb_000640_110 0.2818284398 - - -
15 Hb_006162_060 0.2839866322 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
16 Hb_002942_180 0.2929311299 - - phosphate transporter [Manihot esculenta]
17 Hb_000953_120 0.2947765909 - - -
18 Hb_000737_020 0.2948804977 - - -
19 Hb_012539_090 0.2954644192 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
20 Hb_000270_540 0.2997395423 - - hypothetical protein JCGZ_11527 [Jatropha curcas]

Gene co-expression network

sample Hb_030885_020 Hb_030885_020 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_004770_060 Hb_004770_060 Hb_030885_020--Hb_004770_060 Hb_005597_010 Hb_005597_010 Hb_030885_020--Hb_005597_010 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_020532_010 Hb_020532_010 Hb_030885_020--Hb_020532_010 Hb_154381_010--Hb_003551_040 Hb_002311_460 Hb_002311_460 Hb_154381_010--Hb_002311_460 Hb_001832_220 Hb_001832_220 Hb_154381_010--Hb_001832_220 Hb_012539_090 Hb_012539_090 Hb_154381_010--Hb_012539_090 Hb_000737_020 Hb_000737_020 Hb_154381_010--Hb_000737_020 Hb_003551_040--Hb_002311_460 Hb_003551_040--Hb_001832_220 Hb_003551_040--Hb_012539_090 Hb_003551_040--Hb_000737_020 Hb_004770_060--Hb_020532_010 Hb_169630_010 Hb_169630_010 Hb_004770_060--Hb_169630_010 Hb_003455_010 Hb_003455_010 Hb_004770_060--Hb_003455_010 Hb_002942_180 Hb_002942_180 Hb_004770_060--Hb_002942_180 Hb_004770_060--Hb_005597_010 Hb_000640_110 Hb_000640_110 Hb_005597_010--Hb_000640_110 Hb_004242_210 Hb_004242_210 Hb_005597_010--Hb_004242_210 Hb_005597_010--Hb_003455_010 Hb_000416_120 Hb_000416_120 Hb_005597_010--Hb_000416_120 Hb_122741_010 Hb_122741_010 Hb_060585_010--Hb_122741_010 Hb_001916_010 Hb_001916_010 Hb_060585_010--Hb_001916_010 Hb_060585_010--Hb_003551_040 Hb_060585_010--Hb_154381_010 Hb_060585_010--Hb_012539_090 Hb_020532_010--Hb_002942_180 Hb_094132_010 Hb_094132_010 Hb_020532_010--Hb_094132_010 Hb_103093_010 Hb_103093_010 Hb_020532_010--Hb_103093_010 Hb_000193_030 Hb_000193_030 Hb_020532_010--Hb_000193_030 Hb_021068_030 Hb_021068_030 Hb_020532_010--Hb_021068_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.386342 2.44031 0 1.60444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.860092 0

CAGE analysis