Hb_030949_010

Information

Type -
Description -
Location Contig30949: 25267-26500
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24140g
description POPTRDRAFT_549216; hypothetical protein
nr
ID XP_002299896.2
description hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
swissprot
ID O82089
description Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1
trembl
ID B9GET1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24140g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030949_010 0.0 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
2 Hb_027892_050 0.0992621994 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
3 Hb_008948_010 0.1164965094 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
4 Hb_000956_100 0.1211295397 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_001907_050 0.1222735993 - - Receptor like protein 6, putative [Theobroma cacao]
6 Hb_019925_020 0.1323142081 - - electron carrier, putative [Ricinus communis]
7 Hb_007103_020 0.1335707287 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
8 Hb_000096_050 0.1468754221 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000856_210 0.1477091994 - - nitrate transporter, putative [Ricinus communis]
10 Hb_001131_050 0.1482459558 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
11 Hb_037684_010 0.1514085553 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
12 Hb_002335_010 0.153441199 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
13 Hb_001950_100 0.1557081468 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
14 Hb_005391_050 0.1559721205 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
15 Hb_005790_010 0.156952357 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
16 Hb_000023_180 0.1590121624 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
17 Hb_001318_230 0.1602937905 - - Boron transporter, putative [Ricinus communis]
18 Hb_156850_050 0.160695241 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
19 Hb_000622_030 0.1620745386 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
20 Hb_004785_170 0.1633470311 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_030949_010 Hb_030949_010 Hb_027892_050 Hb_027892_050 Hb_030949_010--Hb_027892_050 Hb_008948_010 Hb_008948_010 Hb_030949_010--Hb_008948_010 Hb_000956_100 Hb_000956_100 Hb_030949_010--Hb_000956_100 Hb_001907_050 Hb_001907_050 Hb_030949_010--Hb_001907_050 Hb_019925_020 Hb_019925_020 Hb_030949_010--Hb_019925_020 Hb_007103_020 Hb_007103_020 Hb_030949_010--Hb_007103_020 Hb_027892_050--Hb_000956_100 Hb_002335_010 Hb_002335_010 Hb_027892_050--Hb_002335_010 Hb_027892_050--Hb_007103_020 Hb_001305_020 Hb_001305_020 Hb_027892_050--Hb_001305_020 Hb_002250_140 Hb_002250_140 Hb_027892_050--Hb_002250_140 Hb_004785_170 Hb_004785_170 Hb_008948_010--Hb_004785_170 Hb_005391_050 Hb_005391_050 Hb_008948_010--Hb_005391_050 Hb_002598_020 Hb_002598_020 Hb_008948_010--Hb_002598_020 Hb_011985_020 Hb_011985_020 Hb_008948_010--Hb_011985_020 Hb_004450_090 Hb_004450_090 Hb_008948_010--Hb_004450_090 Hb_000816_150 Hb_000816_150 Hb_008948_010--Hb_000816_150 Hb_000956_100--Hb_002335_010 Hb_000041_160 Hb_000041_160 Hb_000956_100--Hb_000041_160 Hb_000956_100--Hb_007103_020 Hb_000834_100 Hb_000834_100 Hb_000956_100--Hb_000834_100 Hb_001318_230 Hb_001318_230 Hb_001907_050--Hb_001318_230 Hb_001907_050--Hb_000041_160 Hb_001907_050--Hb_002335_010 Hb_123078_010 Hb_123078_010 Hb_001907_050--Hb_123078_010 Hb_001907_050--Hb_027892_050 Hb_000856_210 Hb_000856_210 Hb_019925_020--Hb_000856_210 Hb_000207_240 Hb_000207_240 Hb_019925_020--Hb_000207_240 Hb_006351_120 Hb_006351_120 Hb_019925_020--Hb_006351_120 Hb_000000_290 Hb_000000_290 Hb_019925_020--Hb_000000_290 Hb_005018_030 Hb_005018_030 Hb_019925_020--Hb_005018_030 Hb_000023_180 Hb_000023_180 Hb_019925_020--Hb_000023_180 Hb_000258_230 Hb_000258_230 Hb_007103_020--Hb_000258_230 Hb_009771_040 Hb_009771_040 Hb_007103_020--Hb_009771_040 Hb_152277_010 Hb_152277_010 Hb_007103_020--Hb_152277_010 Hb_007103_020--Hb_002250_140 Hb_005790_010 Hb_005790_010 Hb_007103_020--Hb_005790_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.199193 0.0162463 0.322725 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0314185 0.240106

CAGE analysis