Hb_030954_020

Information

Type -
Description -
Location Contig30954: 11747-12806
Sequence    

Annotation

kegg
ID rcu:RCOM_1330200
description hypothetical protein
nr
ID XP_002521769.1
description hypothetical protein RCOM_1330200 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S700
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1330200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030954_020 0.0 - - hypothetical protein RCOM_1330200 [Ricinus communis]
2 Hb_009659_020 0.0757082162 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
3 Hb_080477_060 0.0835193872 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001623_430 0.1030841642 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
5 Hb_183086_040 0.1227998094 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
6 Hb_003349_070 0.1230005635 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
7 Hb_000106_100 0.1309365539 - - -
8 Hb_007520_060 0.1330987148 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
9 Hb_002260_020 0.1340442236 - - -
10 Hb_021056_010 0.1362469329 - - unnamed protein product [Vitis vinifera]
11 Hb_000091_100 0.1377479316 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000922_100 0.137918182 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
13 Hb_000820_130 0.1433040749 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
14 Hb_000780_210 0.1449097592 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
15 Hb_000085_330 0.147516622 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
16 Hb_012305_120 0.1498699218 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
17 Hb_004333_030 0.1525748561 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
18 Hb_000212_470 0.1526654852 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
19 Hb_001085_010 0.1535664462 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
20 Hb_023386_010 0.1552776686 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_030954_020 Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_030954_020--Hb_009659_020 Hb_080477_060 Hb_080477_060 Hb_030954_020--Hb_080477_060 Hb_001623_430 Hb_001623_430 Hb_030954_020--Hb_001623_430 Hb_183086_040 Hb_183086_040 Hb_030954_020--Hb_183086_040 Hb_003349_070 Hb_003349_070 Hb_030954_020--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_030954_020--Hb_000106_100 Hb_007520_060 Hb_007520_060 Hb_009659_020--Hb_007520_060 Hb_009659_020--Hb_080477_060 Hb_000345_430 Hb_000345_430 Hb_009659_020--Hb_000345_430 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130 Hb_002260_020 Hb_002260_020 Hb_080477_060--Hb_002260_020 Hb_000091_100 Hb_000091_100 Hb_080477_060--Hb_000091_100 Hb_080477_060--Hb_001623_430 Hb_080477_060--Hb_007520_060 Hb_001623_430--Hb_003349_070 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_183086_040--Hb_000922_100 Hb_183086_040--Hb_000780_210 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_000215_180 Hb_000215_180 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_004223_260 Hb_004223_260 Hb_003349_070--Hb_004223_260 Hb_003349_070--Hb_000106_100 Hb_000819_070 Hb_000819_070 Hb_003349_070--Hb_000819_070 Hb_003349_070--Hb_000085_330 Hb_003349_070--Hb_183086_040 Hb_000106_100--Hb_000215_180 Hb_000106_100--Hb_004223_260 Hb_000106_100--Hb_000780_210 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96985 0.795325 0.145176 2.00754 0.891653 4.31324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2086 12.488 3.90816 1.7967 0.410525

CAGE analysis