Hb_030959_010

Information

Type -
Description -
Location Contig30959: 28-5282
Sequence    

Annotation

kegg
ID rcu:RCOM_0632460
description cullin, putative
nr
ID XP_002519675.1
description cullin, putative [Ricinus communis]
swissprot
ID Q8LGH4
description Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
trembl
ID I1MF27
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0000151
description cullin-4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32704: 1538-1808 , PASA_asmbl_32705: 1809-2074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030959_010 0.0 - - cullin, putative [Ricinus communis]
2 Hb_005116_140 0.0762174917 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
3 Hb_000120_860 0.084393085 - - nucellin, putative [Ricinus communis]
4 Hb_009252_010 0.0901115025 - - PREDICTED: kinesin light chain [Jatropha curcas]
5 Hb_009674_050 0.0942229846 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_000417_170 0.1044115017 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
7 Hb_002611_010 0.104849352 - - amino acid transporter, putative [Ricinus communis]
8 Hb_011364_020 0.1104092704 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_000836_060 0.1126730339 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
10 Hb_007313_040 0.1165684446 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
11 Hb_000270_660 0.1197970935 - - purine permease, putative [Ricinus communis]
12 Hb_002150_020 0.1207414682 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_002805_090 0.1242268809 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_004735_020 0.1244928915 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
15 Hb_001009_260 0.1251267795 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
16 Hb_003746_010 0.1262519516 - - conserved hypothetical protein [Ricinus communis]
17 Hb_130589_010 0.1270224859 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_000025_500 0.1275714353 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_005375_110 0.1287230088 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
20 Hb_001473_170 0.1289863319 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]

Gene co-expression network

sample Hb_030959_010 Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_030959_010--Hb_005116_140 Hb_000120_860 Hb_000120_860 Hb_030959_010--Hb_000120_860 Hb_009252_010 Hb_009252_010 Hb_030959_010--Hb_009252_010 Hb_009674_050 Hb_009674_050 Hb_030959_010--Hb_009674_050 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_002805_090 Hb_002805_090 Hb_005116_140--Hb_002805_090 Hb_005116_140--Hb_000120_860 Hb_005116_140--Hb_009674_050 Hb_002311_130 Hb_002311_130 Hb_005116_140--Hb_002311_130 Hb_000025_500 Hb_000025_500 Hb_005116_140--Hb_000025_500 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_001009_260 Hb_001009_260 Hb_000120_860--Hb_001009_260 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_009252_010--Hb_009674_050 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_005348_110 Hb_005348_110 Hb_009252_010--Hb_005348_110 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_009674_050--Hb_005348_110 Hb_000417_170--Hb_009252_010 Hb_000417_170--Hb_003746_010 Hb_004097_090 Hb_004097_090 Hb_000417_170--Hb_004097_090 Hb_000445_150 Hb_000445_150 Hb_000417_170--Hb_000445_150 Hb_000417_170--Hb_005348_110 Hb_003517_070 Hb_003517_070 Hb_002611_010--Hb_003517_070 Hb_000613_070 Hb_000613_070 Hb_002611_010--Hb_000613_070 Hb_001080_300 Hb_001080_300 Hb_002611_010--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_002611_010--Hb_138585_080 Hb_002611_010--Hb_009674_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36281 3.13844 2.299 8.2625 1.41659 1.60678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74814 1.75688 1.62047 3.26884 11.7483

CAGE analysis