Hb_030982_030

Information

Type -
Description -
Location Contig30982: 25778-32139
Sequence    

Annotation

kegg
ID rcu:RCOM_0106170
description hypothetical protein
nr
ID XP_012074554.1
description PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
swissprot
ID Q9EQ28
description DNA polymerase delta subunit 3 OS=Mus musculus GN=Pold3 PE=1 SV=2
trembl
ID A0A067LCA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13483 PE=4 SV=1
Gene Ontology
ID GO:0006261
description dna polymerase delta subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32763: 25916-27052 , PASA_asmbl_32764: 27097-29039 , PASA_asmbl_32765: 29860-30079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030982_030 0.0 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
2 Hb_000963_040 0.0715481869 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
3 Hb_003119_090 0.0814939929 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
4 Hb_016347_020 0.098135694 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
5 Hb_001227_130 0.1001886337 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
6 Hb_000600_060 0.1019866802 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
7 Hb_004324_400 0.1070197342 - - PREDICTED: protein timeless homolog [Jatropha curcas]
8 Hb_005730_010 0.107946047 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
9 Hb_030736_060 0.1081409378 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
10 Hb_002272_050 0.1112691642 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
11 Hb_002311_380 0.1115287251 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
12 Hb_161568_010 0.1116908931 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_002909_040 0.1117071938 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
14 Hb_003943_050 0.1127206492 - - phosphoglucomutase, putative [Ricinus communis]
15 Hb_000236_490 0.1149630057 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
16 Hb_000513_090 0.117335756 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
17 Hb_023313_040 0.1185512159 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
18 Hb_002326_110 0.1187012505 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
19 Hb_116349_060 0.1211166063 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
20 Hb_000737_030 0.121232046 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_030982_030 Hb_030982_030 Hb_000963_040 Hb_000963_040 Hb_030982_030--Hb_000963_040 Hb_003119_090 Hb_003119_090 Hb_030982_030--Hb_003119_090 Hb_016347_020 Hb_016347_020 Hb_030982_030--Hb_016347_020 Hb_001227_130 Hb_001227_130 Hb_030982_030--Hb_001227_130 Hb_000600_060 Hb_000600_060 Hb_030982_030--Hb_000600_060 Hb_004324_400 Hb_004324_400 Hb_030982_030--Hb_004324_400 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_000963_040--Hb_000600_060 Hb_000963_040--Hb_003119_090 Hb_000963_040--Hb_001227_130 Hb_000963_040--Hb_016347_020 Hb_007007_040 Hb_007007_040 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_000684_080 Hb_000684_080 Hb_016347_020--Hb_000684_080 Hb_000330_060 Hb_000330_060 Hb_016347_020--Hb_000330_060 Hb_001002_060 Hb_001002_060 Hb_016347_020--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_016347_020--Hb_004096_060 Hb_016347_020--Hb_003119_090 Hb_000445_050 Hb_000445_050 Hb_001227_130--Hb_000445_050 Hb_001227_130--Hb_003119_090 Hb_000879_180 Hb_000879_180 Hb_001227_130--Hb_000879_180 Hb_011282_060 Hb_011282_060 Hb_001227_130--Hb_011282_060 Hb_002351_030 Hb_002351_030 Hb_001227_130--Hb_002351_030 Hb_000460_080 Hb_000460_080 Hb_000600_060--Hb_000460_080 Hb_000120_280 Hb_000120_280 Hb_000600_060--Hb_000120_280 Hb_000352_300 Hb_000352_300 Hb_000600_060--Hb_000352_300 Hb_001141_310 Hb_001141_310 Hb_000600_060--Hb_001141_310 Hb_000477_050 Hb_000477_050 Hb_000600_060--Hb_000477_050 Hb_002046_110 Hb_002046_110 Hb_004324_400--Hb_002046_110 Hb_000270_510 Hb_000270_510 Hb_004324_400--Hb_000270_510 Hb_145880_010 Hb_145880_010 Hb_004324_400--Hb_145880_010 Hb_006588_200 Hb_006588_200 Hb_004324_400--Hb_006588_200 Hb_003528_010 Hb_003528_010 Hb_004324_400--Hb_003528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4403 2.96086 7.36229 6.16097 4.95237 2.56928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91192 2.27117 2.59908 4.88758 1.59477

CAGE analysis