Hb_030982_040

Information

Type -
Description -
Location Contig30982: 33426-36566
Sequence    

Annotation

kegg
ID cit:102626907
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006483194.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID M5XSK0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016553mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32766: 33590-33932 , PASA_asmbl_32767: 34029-34560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030982_040 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_005653_120 0.1170089083 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
3 Hb_000809_050 0.1217243927 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
4 Hb_015974_010 0.122185667 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
5 Hb_000072_280 0.1236243375 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
6 Hb_006452_060 0.1249260659 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_001102_010 0.12614673 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
8 Hb_011457_100 0.1282096286 - - ATP binding protein, putative [Ricinus communis]
9 Hb_007245_090 0.1410610824 - - -
10 Hb_000014_100 0.1416338098 - - -
11 Hb_030620_010 0.1426119698 - - -
12 Hb_002890_220 0.1443282412 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
13 Hb_002835_170 0.1466266667 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
14 Hb_001191_100 0.1472756666 - - F-actin capping protein beta subunit [Populus trichocarpa]
15 Hb_005298_030 0.1472978593 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
16 Hb_000787_070 0.1534486936 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
17 Hb_000304_020 0.1536559192 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
18 Hb_001488_100 0.1567826751 - - -
19 Hb_000340_430 0.1583844831 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_143629_050 0.1586844923 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_030982_040 Hb_030982_040 Hb_005653_120 Hb_005653_120 Hb_030982_040--Hb_005653_120 Hb_000809_050 Hb_000809_050 Hb_030982_040--Hb_000809_050 Hb_015974_010 Hb_015974_010 Hb_030982_040--Hb_015974_010 Hb_000072_280 Hb_000072_280 Hb_030982_040--Hb_000072_280 Hb_006452_060 Hb_006452_060 Hb_030982_040--Hb_006452_060 Hb_001102_010 Hb_001102_010 Hb_030982_040--Hb_001102_010 Hb_001946_320 Hb_001946_320 Hb_005653_120--Hb_001946_320 Hb_005653_120--Hb_015974_010 Hb_002307_090 Hb_002307_090 Hb_005653_120--Hb_002307_090 Hb_005615_070 Hb_005615_070 Hb_005653_120--Hb_005615_070 Hb_005653_120--Hb_000809_050 Hb_004650_070 Hb_004650_070 Hb_000809_050--Hb_004650_070 Hb_000304_020 Hb_000304_020 Hb_000809_050--Hb_000304_020 Hb_000809_050--Hb_000072_280 Hb_001366_220 Hb_001366_220 Hb_000809_050--Hb_001366_220 Hb_000085_310 Hb_000085_310 Hb_000809_050--Hb_000085_310 Hb_005867_040 Hb_005867_040 Hb_015974_010--Hb_005867_040 Hb_004453_140 Hb_004453_140 Hb_015974_010--Hb_004453_140 Hb_113951_010 Hb_113951_010 Hb_015974_010--Hb_113951_010 Hb_000638_020 Hb_000638_020 Hb_015974_010--Hb_000638_020 Hb_008695_190 Hb_008695_190 Hb_000072_280--Hb_008695_190 Hb_001191_100 Hb_001191_100 Hb_000072_280--Hb_001191_100 Hb_004882_020 Hb_004882_020 Hb_000072_280--Hb_004882_020 Hb_000072_280--Hb_001366_220 Hb_000072_280--Hb_000085_310 Hb_001366_230 Hb_001366_230 Hb_000072_280--Hb_001366_230 Hb_001220_040 Hb_001220_040 Hb_006452_060--Hb_001220_040 Hb_000291_210 Hb_000291_210 Hb_006452_060--Hb_000291_210 Hb_030620_010 Hb_030620_010 Hb_006452_060--Hb_030620_010 Hb_006452_060--Hb_000085_310 Hb_000436_050 Hb_000436_050 Hb_006452_060--Hb_000436_050 Hb_000078_030 Hb_000078_030 Hb_001102_010--Hb_000078_030 Hb_011457_100 Hb_011457_100 Hb_001102_010--Hb_011457_100 Hb_002835_170 Hb_002835_170 Hb_001102_010--Hb_002835_170 Hb_000787_070 Hb_000787_070 Hb_001102_010--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_001102_010--Hb_005016_130 Hb_000193_230 Hb_000193_230 Hb_001102_010--Hb_000193_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.257 0.483679 0.266697 0.265505 14.2797 5.11082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5171 12.1894 13.2529 0.879387 0.104655

CAGE analysis