Hb_030982_060

Information

Type -
Description -
Location Contig30982: 53381-54124
Sequence    

Annotation

kegg
ID rcu:RCOM_1182700
description hypothetical protein
nr
ID XP_002528482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1182700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030982_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011947_020 0.150740893 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_032225_030 0.1809122501 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
4 Hb_001439_110 0.1887931687 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
5 Hb_000922_010 0.1990145954 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
6 Hb_003592_030 0.1990961754 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
7 Hb_000189_590 0.1998162784 - - PREDICTED: cysteine synthase [Jatropha curcas]
8 Hb_005152_010 0.2020867916 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
9 Hb_001170_010 0.2064014656 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_002471_260 0.2093117999 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
11 Hb_004195_090 0.2150356282 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
12 Hb_000824_050 0.2165423082 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
13 Hb_002835_350 0.2174877413 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
14 Hb_006922_090 0.2316926252 - - PREDICTED: interaptin [Jatropha curcas]
15 Hb_004724_450 0.2364247435 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
16 Hb_029921_030 0.2365198492 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007545_140 0.2384359285 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
18 Hb_042509_020 0.2386167945 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
19 Hb_023827_020 0.2392144281 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
20 Hb_158092_060 0.2395019037 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_030982_060 Hb_030982_060 Hb_011947_020 Hb_011947_020 Hb_030982_060--Hb_011947_020 Hb_032225_030 Hb_032225_030 Hb_030982_060--Hb_032225_030 Hb_001439_110 Hb_001439_110 Hb_030982_060--Hb_001439_110 Hb_000922_010 Hb_000922_010 Hb_030982_060--Hb_000922_010 Hb_003592_030 Hb_003592_030 Hb_030982_060--Hb_003592_030 Hb_000189_590 Hb_000189_590 Hb_030982_060--Hb_000189_590 Hb_011947_020--Hb_000189_590 Hb_000824_050 Hb_000824_050 Hb_011947_020--Hb_000824_050 Hb_023827_020 Hb_023827_020 Hb_011947_020--Hb_023827_020 Hb_011947_020--Hb_032225_030 Hb_004330_080 Hb_004330_080 Hb_011947_020--Hb_004330_080 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_007545_140 Hb_007545_140 Hb_032225_030--Hb_007545_140 Hb_001369_140 Hb_001369_140 Hb_032225_030--Hb_001369_140 Hb_001170_010 Hb_001170_010 Hb_032225_030--Hb_001170_010 Hb_000110_380 Hb_000110_380 Hb_032225_030--Hb_000110_380 Hb_003226_120 Hb_003226_120 Hb_001439_110--Hb_003226_120 Hb_138710_010 Hb_138710_010 Hb_001439_110--Hb_138710_010 Hb_001439_110--Hb_000189_590 Hb_001439_110--Hb_003592_030 Hb_001390_030 Hb_001390_030 Hb_001439_110--Hb_001390_030 Hb_005152_010 Hb_005152_010 Hb_000922_010--Hb_005152_010 Hb_001004_100 Hb_001004_100 Hb_000922_010--Hb_001004_100 Hb_158092_060 Hb_158092_060 Hb_000922_010--Hb_158092_060 Hb_000471_080 Hb_000471_080 Hb_000922_010--Hb_000471_080 Hb_001123_010 Hb_001123_010 Hb_000922_010--Hb_001123_010 Hb_002835_340 Hb_002835_340 Hb_003592_030--Hb_002835_340 Hb_000116_590 Hb_000116_590 Hb_003592_030--Hb_000116_590 Hb_009736_010 Hb_009736_010 Hb_003592_030--Hb_009736_010 Hb_004724_450 Hb_004724_450 Hb_003592_030--Hb_004724_450 Hb_002539_020 Hb_002539_020 Hb_000189_590--Hb_002539_020 Hb_002539_010 Hb_002539_010 Hb_000189_590--Hb_002539_010 Hb_002835_350 Hb_002835_350 Hb_000189_590--Hb_002835_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244598 1.72628 0.542523 9.80144 0.22424 0.0414131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48245 2.54453 1.76805 13.2894 1.4664

CAGE analysis