Hb_030992_010

Information

Type -
Description -
Location Contig30992: 1137-1604
Sequence    

Annotation

kegg
ID rcu:RCOM_0010840
description acetylornithine aminotransferase, putative (EC:2.6.1.11)
nr
ID XP_002530446.1
description acetylornithine aminotransferase, putative [Ricinus communis]
swissprot
ID O04866
description Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1
trembl
ID B9SWS7
description Acetylornithine aminotransferase, putative OS=Ricinus communis GN=RCOM_0010840 PE=3 SV=1
Gene Ontology
ID GO:0005739
description acetylornithine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030992_010 0.0 - - acetylornithine aminotransferase, putative [Ricinus communis]
2 Hb_000796_020 0.12494488 - - ADP-ribosylation factor [Phaseolus vulgaris]
3 Hb_122636_010 0.1390255069 - - dienelactone hydrolase family protein [Populus trichocarpa]
4 Hb_000776_060 0.1420676177 - - histone H4 [Zea mays]
5 Hb_000062_090 0.1458018278 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
6 Hb_000008_190 0.147359492 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
7 Hb_000177_110 0.1525393999 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
8 Hb_000683_100 0.1545870777 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
9 Hb_003207_150 0.1568171471 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
10 Hb_008185_020 0.1591405114 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
11 Hb_001584_240 0.1600997357 - - ADP-ribosylation factor [Gossypium barbadense]
12 Hb_001195_410 0.1611414351 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
13 Hb_007390_020 0.165447271 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
14 Hb_000671_130 0.1694356006 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
15 Hb_001824_040 0.1725025864 - - hypothetical protein M569_11359, partial [Genlisea aurea]
16 Hb_148130_020 0.172948735 - - -
17 Hb_006634_110 0.1770926007 - - BnaC04g40780D [Brassica napus]
18 Hb_001217_010 0.1789904898 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
19 Hb_000111_030 0.1814028804 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
20 Hb_001208_040 0.1817685859 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]

Gene co-expression network

sample Hb_030992_010 Hb_030992_010 Hb_000796_020 Hb_000796_020 Hb_030992_010--Hb_000796_020 Hb_122636_010 Hb_122636_010 Hb_030992_010--Hb_122636_010 Hb_000776_060 Hb_000776_060 Hb_030992_010--Hb_000776_060 Hb_000062_090 Hb_000062_090 Hb_030992_010--Hb_000062_090 Hb_000008_190 Hb_000008_190 Hb_030992_010--Hb_000008_190 Hb_000177_110 Hb_000177_110 Hb_030992_010--Hb_000177_110 Hb_000683_100 Hb_000683_100 Hb_000796_020--Hb_000683_100 Hb_000796_020--Hb_000776_060 Hb_000796_020--Hb_122636_010 Hb_004453_070 Hb_004453_070 Hb_000796_020--Hb_004453_070 Hb_000796_020--Hb_000062_090 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_000671_130 Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_000776_060--Hb_000062_090 Hb_012760_050 Hb_012760_050 Hb_000776_060--Hb_012760_050 Hb_001195_410 Hb_001195_410 Hb_000776_060--Hb_001195_410 Hb_006711_090 Hb_006711_090 Hb_000776_060--Hb_006711_090 Hb_000402_130 Hb_000402_130 Hb_000062_090--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000062_090--Hb_048476_060 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000062_090--Hb_000671_130 Hb_012362_030 Hb_012362_030 Hb_000062_090--Hb_012362_030 Hb_118507_010 Hb_118507_010 Hb_000008_190--Hb_118507_010 Hb_002486_050 Hb_002486_050 Hb_000008_190--Hb_002486_050 Hb_000008_190--Hb_001195_410 Hb_004126_040 Hb_004126_040 Hb_000008_190--Hb_004126_040 Hb_000008_190--Hb_002660_110 Hb_001481_150 Hb_001481_150 Hb_000008_190--Hb_001481_150 Hb_000177_110--Hb_003207_150 Hb_034726_010 Hb_034726_010 Hb_000177_110--Hb_034726_010 Hb_000424_030 Hb_000424_030 Hb_000177_110--Hb_000424_030 Hb_007483_060 Hb_007483_060 Hb_000177_110--Hb_007483_060 Hb_002217_500 Hb_002217_500 Hb_000177_110--Hb_002217_500 Hb_000177_110--Hb_000671_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.711388 2.83845 4.89384 22.0791 1.15888 3.80875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39926 6.59634 1.5735 3.4512 3.25173

CAGE analysis